S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Sum1p	YPR054W	PubMed Xie J et al., The EMBO journal, 1999 Nov 15;18(22):6448-54	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	Unstressed log-phase growth (control)	SD medium; mid-log phase	N/A
		PubMed Chan TF et al., The Journal of biological chemistry, 2001 Mar 2;276(9):6463-7	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	Cell cycle/morphology	early and late phase of the sporulating program (0-4h and 24h of incubation in sporulating medium, respectively)	N/A
		PubMed Pak J et al., Molecular and cellular biology, 2002 Sep;22(18):6417-29	Indirect	lacZ - wt vs TF mutant	Negative	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Pierce M et al., Molecular and cellular biology, 2003 Jul;23(14):4814-25	Indirect	Microarray analysis - WT vs TF Deletion	Negative	W303-1A	Unstressed log-phase growth (control)	Yeast cultures were grown in yeast extract-peptone-dextrose to mid-log phase.	N/A
		PubMed Ahmed NT et al., Molecular and cellular biology, 2009 Aug;29(16):4352-62	Direct	ChIP	N/A	S288c	Cell cycle/morphology	meiotic cells	N/A
		PubMed Gurvitz A et al., FEMS yeast research, 2009 Sep;9(6):821-31	Indirect	RT-PCR - wt vs TF mutant	Negative	yAG561	Carbon source quality/availability	Liquid oleic acid medium (YPO)	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Negative	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	-1.6050459738554
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	Unstressed log-phase growth (control)	YPD medium, 25.C	N/A