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Modelling prediction
Essentiality
[metab] Optimisation
manipulating gene expression
manipulating TF expression
Cross species
Promoter analysis
Homologous network
Network comparison
Rank by Unique TFBS
Rank genes
Rank by TF
Rank by GO
Regulatory Associations
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Pattern Matching
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Find TF Binding Site(s)
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ORF List ⇔ Gene List
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TF-Consensus List
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Upstream Sequence
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Cross species comparison: Promoter analysis
by target genes
Regulated Genes
Consider TF binding sites from strain:
Candida albicans SC5314
Candida glabrata CBS138
Candida parapsilosis CDC317
Candida tropicalis MYA-3404
Saccharomyces cerevisiae S288c
Kluyveromyces lactis NRRL Y-1140
Yarrowia lipolytica CLIB122
Komagataella phaffii GS115
Compare genes with orthology in strains:
Saccharomyces cerevisiae S288c
Candida albicans SC5314
Candida auris B8441
Candida glabrata CBS138
Candida parapsilosis CDC317
Candida tropicalis MYA-3404
Kluyveromyces lactis NRRL Y-1140
Kluyveromyces marxianus DMKU3-1042
Komagataella phaffii GS115
Rhodotorula toruloides NP11
Saccharomyces sp. 'boulardii' biocodex
Saccharomyces sp. 'boulardii' unique28
Schizosaccharomyces pombe 972h-
Yarrowia lipolytica CLIB122
Zygosaccharomyces bailii IST302
Synteny Level:
BLAST Best-Scores (Only Homology)
BLAST Best-Scores + at least 1 neighbor
BLAST Best-Scores + at least 2 neighbors
BLAST Best-Scores + at least 3 neighbors