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Modelling prediction
Essentiality
[metab] Optimisation
manipulating gene expression
manipulating TF expression
Cross species
Promoter analysis
Homologous network
Network comparison
Rank by Unique TFBS
Rank genes
Rank by TF
Rank by GO
Regulatory Associations
Search for TFs
Search for Genes
Search for Associations
Pattern Matching
Search by DNA Motif
Find TF Binding Site(s)
Utilities
Search for Orthologs
IUPAC Code Generation
ORF List ⇔ Gene List
Retrieve
TF-Consensus List
Regulation Matrix
Upstream Sequence
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Search Regulatory Associations
Filter Documented Regulations by
Transcription factors
Target ORF/Genes
DNA binding evidence
Expression evidence
TF acting as activator
TF acting as inhibitor
Consider also regulations without
association information
DNA binding
or
expression evidence
DNA binding
and
expression evidence
Filter Documented Regulations by environmental condition:
Group:
----
Biofilm formation
Carbon source quality/availability
Cell cycle/morphology
Human niche conditions
In vitro
Ion/metal/phosphate/sulfur/vitamin availability
Lipid supplementation
Nitrogen source quality/availability
Oxygen availability
Pathogenicity
Stress
Unstressed log-phase growth (control)
N/A
Subgroup:
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While searching for regulations, consider:
User TF list against User target gene list
S.cerevisiae TF list against User target gene list
User TF list against S.cerevisiae target gene list
Search regulations between:
Each Transcription Factor to Any Gene (one-to-one)
Every Transcription Factor to Any Gene (all-to-one)