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> Homologous network analysis
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Modelling prediction
Essentiality
[metab] Optimisation
manipulating gene expression
manipulating TF expression
Cross species
Promoter analysis
Homologous network
Network comparison
Rank by Unique TFBS
Rank genes
Rank by TF
Rank by GO
Regulatory Associations
Search for TFs
Search for Genes
Search for Associations
Pattern Matching
Search by DNA Motif
Find TF Binding Site(s)
Utilities
Search for Orthologs
IUPAC Code Generation
ORF List ⇔ Gene List
Retrieve
TF-Consensus List
Regulation Matrix
Upstream Sequence
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Cross species: Homologous network analysis
Regulations Filter
Transcription factors
Target ORF/Genes
Documented
DNA binding evidence
Expression evidence
TF acting as activator
TF acting as inhibitor
DNA binding
or
expression evidence
DNA binding
and
expression evidence
Consider also regulations without
associated information
Check for all TFs
Synteny Level:
BLAST Best-Scores (Only Homology)
BLAST Best-Scores + at least 1 neighbor
BLAST Best-Scores + at least 2 neighbors
BLAST Best-Scores + at least 3 neighbors