Yeastract IST IBB-BSRG INESC-ID
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Transcription Factor Binding Site Reference(s)

The Yeastract team, is actively curating each transcriptor factor binding site evidence code and environmental condition.
Transcription
Factor
Binding Site References Source Evidence
Code
Environmental
Condition
Pdr1p TCCGCGGA PubMed external link Badis G et al., Molecular Cell, 2008;32(6):878-87Badis G et al., Molecular Cell, 2008;32(6):878-87
PubMed external link Delahodde A et al., Mol Cell Biol, 1995;15(8):4043-51Delahodde A et al., Mol Cell Biol, 1995;15(8):4043-51
PubMed external link Katzmann DJ et al., J Biol Chem, 1996 Sep 20;271(38):23049-54Katzmann DJ et al., J Biol Chem, 1996 Sep 20;271(38):23049-54
PubMed external link Katzmann DJ et al., Mol Cell Biol, 1994;14(7):4653-61Katzmann DJ et al., Mol Cell Biol, 1994;14(7):4653-61
PubMed external link Mahe Y et al., Mol Microbiol, 1996;20(1):109-17Mahe Y et al., Mol Microbiol, 1996;20(1):109-17
PubMed external link Mamnun YM et al., Mol Microbiol, 2002;6(5):1429-40Mamnun YM et al., Mol Microbiol, 2002;6(5):1429-40
PubMed external link Miura F et al., FEBS Lett, 2001;505(1):103-8Miura F et al., FEBS Lett, 2001;505(1):103-8
PubMed external link Nourani A et al., Mol Cell Biol, 1997;7(9):5453-60Nourani A et al., Mol Cell Biol, 1997;7(9):5453-60
PubMed external link Wolfger H et al., FEBS Lett, 1997 Dec 1;418(3):269-74Wolfger H et al., FEBS Lett, 1997 Dec 1;418(3):269-74
BSRG curated

Consensus sequences are
represented according to
the following IUPAC
frequency table:

IUPAC frequency table
A C G T
A 1 0 0 0
C 0 1 0 0
G 0 0 1 0
T 0 0 0 1
W1/2 0 0 1/2
S 0 1/21/2 0
R1/2 0 1/2 0
Y 0 1/2 0 1/2
M1/21/2 0 0
K 0 0 1/21/2
B 0 1/31/31/3
D1/3 0 1/31/3
H1/31/3 0 1/3
V1/31/31/3 0
N1/41/41/41/4
x1/41/41/41/4
a1/21/61/61/6
c1/61/21/61/6
g1/61/61/21/6
t1/61/61/61/2
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