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YEASTRACT+ INESC-ID IST IBB
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Locus Information

Standard Name CDC39
Systematic Name YCR093W
Alias NOT1, ROS1, SMD6
Strain S288c
Description Subunit of the CCR4-NOT1 core complex; this complex has multiple roles in the regulation of mRNA levels including regulation of transcription and destabilization of mRNA by deadenylation; basal transcription factor that increases initiation and elongation; activates the ATPase activity of Dhh1p, resulting in processing body disassembly
External sources Open in SGD external link
Open in KEGG external link
Gene Sequence
Download FASTA
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>CDC39 YCR093W
ATGCTATCGGCCACATACCGTGATTTGAACACAGCATCTAATTTAGAAACATCAAAGGAA
AAACAGGCCGCTCAAATCGTCATTGCACAAATTAGTTTATTATTCACGACTCTTAACAAC
GACAATTTTGAATCCGTGGAAAGAGAAATTAGACATATTTTAGACAGGTCGTCCGTAGAT
ATTTACATAAAAGTTTGGGAACGATTATTAACCTTAAGTTCTCGGGATATTTTACAAGCG
GGAAAATTTTTACTTCAAGAAAATCTACTACACAGACTACTATTAGAATTTGCGAAGGAT
TTACCGAAGAAAAGCACAGACCTTATTGAGCTTTTGAAAGAACGAACCTTCAATAACCAG
GAGTTTCAAAAACAAACAGGAATTACATTATCACTTTTCATTGATCTATTTGATAAATCT
GCAAACAAGGACATTATAGAGTCACTTGACCGCTCCTCTCAGATTAACGATTTCAAGACA
ATTAAGATGAATCATACAAATTATTTAAGGAATTTTTTTCTTCAAACCACACCAGAAACA
CTAGAGTCCAATCTACGCGACTTATTGCATTCCTTGGAAGGTGAAAGTCTAAATGACTTA
TTAGCTCTTTTACTGTCCGAAATACTTTCACCTGGGTCTCAGAATTTACAAAATGATCCC
ACACGGAGTTGGTTGACACCTCCGATGGTTTTAGACGCAACGAACCGTGGGAACGTTATA
GCAAGATCTATAAGTTCTCTGCAAGCCAACCAGATAAATTGGAATCGTGTGTTTAATTTA
ATGTCAACAAAGTATTTCTTGAGCGCACCATTGATGCCTACTACAGCATCTTTGAGTTGC
TTATTTGCAGCATTGCACGATGGTCCAGTTATTGATGAATTTTTCAGTTGCGACTGGAAA
GTTATTTTCAAACTAGATTTGGCCATTCAACTTCATAAGTGGTCGGTACAGAATGGTTGC
TTTGACTTATTAAATGCAGAAGGTACCAGGAAAGTTTCTGAAACCATCCCAAACACAAAG
CAATCTTTACTCTACTTATTATCCATTGCATCATTGAATTTAGAATTGTTCCTACAAAGG
GAGGAATTGTCTGATGGTCCTATGCTAGCTTATTTTCAAGAGTGCTTCTTTGAAGATTTC
AACTACGCCCCTGAATATCTTATTTTAGCATTAGTCAAAGAAATGAAGCGGTTCGTTTTA
TTGATAGAAAACAGGACAGTCATAGACGAAATACTTATTACCTTATTGATTCAAGTGCAT
AATAAATCACCGTCATCGTTCAAGGACGTTATTTCTACAATAACCGATGATTCTAAAATC
GTAGATGCAGCAAAAATCATAATCAACTCGGATGACGCACCTATTGCCAACTTTTTAAAA
TCGTTGTTAGATACGGGAAGATTAGATACGGTCATTAATAAACTTCCTTTCAATGAAGCT
TTTAAAATTTTGCCATGCGCAAGACAAATTGGTTGGGAGGGGTTCGATACTTTCTTAAAA
ACAAAAGTTTCTCCATCTAATGTCGATGTAGTGCTGGAATCACTAGAGGTTCAAACGAAA
ATGACTGATACAAACACTCCATTTAGGTCATTAAAGACATTTGACTTATTCGCTTTTCAT
TCATTAATTGAAGTACTGAACAAATGCCCACTAGATGTTCTCCAATTACAAAGGTTTGAA
TCCTTGGAATTTTCCTTATTAATTGCATTTCCTAGATTGATCAATTTTGGTTTTGGACAC
GATGAAGCTATTTTAGCCAATGGTGACATCGCAGGGATTAATAATGATATTGAAAAGGAG
ATGCAGAACTATTTACAGAAAATGTATAGTGGTGAGTTAGCCATTAAAGATGTAATCGAA
CTTCTGAGAAGGTTAAGAGATAGCGACTTGCCAAGGGACCAGGAAGTCTTCACATGTATT
ACCCATGCCGTTATAGCAGAATCGACATTCTTCCAAGATTATCCATTGGATGCATTGGCT
ACTACATCTGTTCTTTTTGGATCCATGATTCTCTTTCAACTGTTACGTGGATTCGTATTA
GACGTCGCATTTAGGATAATCATGAGGTTTGCCAAGGAGCCTCCAGAGTCCAAGATGTTT
AAGTTTGCTGTACAAGCTATTTATGCATTTAGGATACGTTTGGCCGAATATCCACAGTAT
TGTAAGGACCTCTTGAGAGATGTTCCGGCTTTGAAGTCTCAGGCTCAAGTTTACCAATCT
ATCGTCGAAGCTGCTACCCTAGCAAATGCTCCAAAGGAAAGGTCAAGACCCGTCCAGGAA
ATGATCCCATTAAAATTTTTTGCTGTAGATGAAGTTTCATGTCAGATCAATCAAGAAGGT
GCTCCTAAAGATGTCGTAGAAAAAGTTCTTTTTGTTCTCAACAACGTTACTCTGGCTAAC
TTGAATAATAAGGTTGATGAATTGAAAAAAAGTTTGACACCAAATTATTTTTCTTGGTTT
TCCACATATTTAGTTACGCAAAGGGCTAAAACAGAACCTAACTATCATGATCTTTATAGC
AAGGTTATAGTTGCTATGGGGTCAGGGTTGCTACATCAGTTCATGGTCAACGTTACTTTG
AGACAATTATTTGTCCTACTATCTACAAAAGACGAGCAAGCCATCGATAAAAAGCACCTA
AAGAATTTGGCTTCATGGTTAGGATGTATCACATTAGCTTTGAATAAACCAATTAAACAC
AAGAATATCGCATTCAGGGAAATGTTAATCGAAGCTTATAAGGAAAATAGACTTGAAATA
GTTGTGCCTTTTGTAACAAAGATTTTACAAAGGGCTTCTGAATCAAAAATTTTCAAGCCT
CCAAATCCCTGGACTGTTGGCATATTAAAGCTGTTGATTGAGTTGAACGAAAAAGCAAAC
TGGAAATTAAGTTTGACTTTCGAAGTTGAGGTTTTATTAAAATCTTTTAATTTGACCACC
AAATCTCTCAAGCCCTCGAATTTCATCAATACTCCGGAAGTTATAGAAACTTTATCCGGT
GCTTTGGGATCAATCACTCTGGAGCAACAACAAACAGAGCAACAAAGGCAAATTATACTA
ATGCAACAACACCAGCAACAGATGCTAATATATCAACAGAGACAACAACAACAACAACAA
AGGCAACAACAACAACAACATCATATTAGTGCAAATACAATCGCAGACCAACAAGCGGCA
TTTGGCGGCGAGGGTTCAATTTCACACGACAATCCTTTTAACAACTTACTTGGTTCTACT
ATTTTTGTAACCCACCCTGACTTGAAGAGGGTATTTCAAATGGCTTTAGCCAAGTCAGTT
CGCGAAATTTTGTTGGAAGTAGTCGAAAAGTCATCAGGAATTGCTGTTGTTACGACGACA
AAAATAATACTTAAAGACTTTGCCACTGAAGTTGATGAGTCTAAGTTGAAGACGGCTGCA
ATCATTATGGTAAGGCATTTGGCACAAAGTTTAGCTCGAGCTACTTCAATTGAACCATTG
AAAGAAGGCATACGTTCTACTATGCAATCACTAGCACCGAATTTAATGTCTCTTTCTTCT
TCACCTGCAGAGGAGCTTGACACGGCAATAAATGAAAATATTGGCATTGCTCTAGTTTTG
ATTGAGAAAGCATCTATGGACAAGTCTACTCAAGATTTAGCAGACCAATTGATGCAAGCG
ATTGCTATTCGTCGTTATCACAAGGAAAGAAGGGCAGACCAACCATTTATTACGCAAAAT
ACCAATCCATATTCACTGTCTTTACCAGAACCTCTTGGTTTGAAAAACACTGGTGTTACT
CCTCAACAATTCAGGGTATACGAAGAATTTGGTAAGAATATTCCAAACTTGGATGTTATT
CCGTTTGCAGGATTGCCCGCTCACGCTCCACCGATGACTCAAAATGTGGGTTTAACTCAG
CCTCAGCAACAACAAGCGCAAATGCCTACCCAAATCCTAACCTCCGAACAAATAAGAGCT
CAACAACAACAGCAGCAATTACAGAAAAGCCGTTTGAATCAGCCATCCCAGTCGGCTCAA
CCTCCAGGAGTGAATGTCCCAAATCCTCAAGGTGGGATTGCTGCAGTTCAATCAGATTTG
GAACAGAATCAACGTGTTCTCGTTCACCTCATGGACATTTTAGTTTCTCAAATTAAAGAA
AATGCTACGAAGAATAACTTAGCTGAATTAGGCGATCAAAACCAAATTAAAACCATCATT
TTTCAAATTTTGACATTCATTGCAAAAAGCGCACAAAAGGATCAATTAGCTTTAAAGGTA
TCCCAAGCTGTCGTTAATAGCCTTTTTGCCACTAGTGAGAGTCCTCTCTGCAGAGAAGTT
TTGTCCCTACTTTTGGAAAAGTTATGTTCTTTATCCCTCGTTGCTAGAAAAGACGTTGTC
TGGTGGTTAGTTTATGCCTTGGACAGTAGGAAATTCAATGTTCCCGTTATCAGATCCCTT
CTAGAAGTTAATTTAATTGATGCTACAGAATTAGATAACGTTTTAGTTACTGCAATGAAA
AATAAAATGGAGAACTCAACTGAATTTGCTATGAAATTAATTCAGAATACTGTCTTGTCT
GATGATCCAATTTTGATGAGAATGGACTTCATTAAAACCTTAGAACACTTGGCCTCTTCG
GAAGATGAAAATGTAAAGAAATTCATCAAAGAGTTCGAAGATACTAAGATAATGCCAGTG
AGGAAAGGTACCAAAACCACAAGAACAGAAAAGCTTTACTTAGTATTTACGGAATGGGTA
AAATTACTTCAAAGAGTTGAGAATAACGACGTAATCACAACTGTTTTTATCAAGCAATTA
GTCGAAAAGGGTGTTATCAGCGATACTGATAATTTACTTACATTTGTCAAAAGTTCTCTT
GAGCTATCAGTTTCTTCATTCAAAGAAAGTGACCCGACTGATGAGGTTTTCATCGCTATT
GATGCTCTAGGATCGCTAATTATAAAATTGTTGATTTTACAGGGTTTCAAAGATGATACA
AGAAGAGATTACATAAATGCAATATTTTCTGTGATCGTTTTAGTGTTTGCTAAGGATCAT
AGCCAAGAGGGTACCACATTCAATGAACGACCATATTTCAGACTATTTTCTAACATCTTA
TACGAATGGGCTACCATCAGGACGCACAATTTTGTTAGAATATCTGATTCCAGCACTAGG
CAGGAGCTGATCGAATTTGATTCTGTATTTTACAACACTTTCTCAGGATATTTGCACGCT
CTGCAACCATTTGCCTTCCCTGGATTCTCATTTGCATGGGTGACACTATTATCACACAGA
ATGTTATTACCAATTATGCTAAGATTACCCAATAAAATAGGTTGGGAAAAGTTAATGCTT
TTGATTATCGATTTGTTTAAATTTTTGGACCAATACACAAGTAAACATGCAGTCTCTGAC
GCTGTTTCGGTTGTTTATAAGGGAACACTGCGTGTTATTTTAGGCATTTCGAATGATATG
CCATCCTTTTTGATTGAAAATCACTATGAATTAATGAACAATCTACCTCCAACATATTTC
CAACTAAAGAATGTTATTTTATCTGCTATTCCTAAGAATATGACCGTTCCCAACCCATAT
GACGTGGATCTTAATATGGAGGATATTCCAGCATGTAAAGAACTACCTGAAGTCTTCTTT
GATCCTGTAATTGATTTACACTCATTGAAAAAGCCAGTTGACAACTACCTACGTATTCCC
TCAAATTCATTATTAAGAACAATACTAAGCGCTATTTACAAGGATACCTATGACATAAAA
AAGGGCGTAGGCTACGACTTTTTATCTGTTGATAGTAAATTAATTCGCGCTATTGTATTA
CATGTGGGCATTGAAGCTGGAATAGAGTATAAGAGAACTTCTTCAAATGCGGTATTTAAT
ACGAAGTCTTCTTATTATACTTTATTGTTCAATCTGATTCAAAATGGTAGCATCGAAATG
AAATATCAAATTATTCTGTCTATTGTGGAACAATTGCGGTATCCAAACATCCACACCTAT
TGGTTCAGCTTTGTGTTAATGAATATGTTCAAAAGTGACGAATGGAATGATCAAAAACTT
GAAGTCCAAGAAATTATTTTAAGAAACTTTTTAAAAAGAATTATTGTTAACAAACCACAT
ACCTGGGGTGTTTCAGTTTTCTTTACTCAGTTGATAAACAATAACGATATTAATCTTTTA
GACCTGCCCTTTGTACAAAGTGTTCCCGAAATTAAACTAATTTTACAACAATTAGTAAAA
TATTCCAAAAAATACACAACCAGTGAACAAGATGACCAATCCGCCACCATCAATAGAAGG
CAAACCCCTCTACAATCCAACGCATAA
Promoter Sequence
Download FASTA
>CDC39 YCR093W
TGCTTCTTAATAGCGCTTGTTTCTGCTTGCTCTACCACGGCAACCTTTAAATTATGATGC
ACAAGTCTCTCTAGGTGAACGTTTAATCTGACATCCGGGAAAGAACAGTACGCAAACTGC
CTATGATTGCAATCTTGAGGATTAGACTCATCGATAGTCAATTTTCCAGGCACAAGTTTG
ATGTGAAGTATTCTGCTAACCGTTACTGCATCCTCTGCAAAACATTTGTACTTGTAGCCT
ACTCTAATAACAAGCACTTTATCTCTATGATGCATTTTCAGGTCCTTCACCTGTTTGTCC
AAGGGAGTAAGTTTCGCTGTAGGGGACTTTCTGGCTTTTTTTTTTACGAAATCTTCCTCA
CCCTCTTCCTCATCATCTTCAGCCTCAACATTTTCATCACTTCGTCTTTTCATAATCCTA
TCCAATTTCTTAGCAAAGTCAATATCATTAAATGTTGTCGAAGTACCACTAGTCTTTTCT
GAATTTTTCGAATTCTTGGAAGAAACACTGCCTTTGAGTGGAAAGCTATCATTAGTTACT
GTTGTGCTTGCAACAGAAGATAAATTGTCCTCTTCATCAGTGTCAAGGCAGATGGATTCG
CTACCAGCGCCATTTCCAACCGCAACTTCTTGTTCTTGCTTATGCGTCAGCTCTGATTTT
ACCGCCTTCTTGAAAAACCTGCTTATTGTGGGTTGTCCCGCCATTATTGTTAATAGATTC
AACAAAATAAATCTATTTGCACTGCTTTTGGCTCTCAAAAGTACCAGTTTAGGTTCATTA
CCTATCACCATTGTTCCAGCTTATTTATCATTGAAAATTCACGTGATCGCAATATTCCGT
CAGGAGTGATAAATACACGAAAATTTTTCTTTTTTTTCGGTGGCAACCAAAGTCAAACCA
TCGAATTCGAATAAGATAAACAGGGGCAAAGGTGAGTCGGGGAAACACTATTGGTAAAAG
ATAAGCAATTGAGAAACGTCACTCAGGGACAATTGATTAC
Chr coordinates Chr III from 280117-286443
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