Locus Information
Locus Info
Protein Info
GO Info
Orthologs
Standard Name
PCF11 Systematic Name
YDR228C Strain
S288c Description
mRNA 3' end processing factor; essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing and in transcription termination; binds C-terminal domain of largest subunit of RNA pol II (Rpo21p); required for gene looping; relocalizes to the cytosol in response to hypoxia External sources
Open in SGD
Open in KEGG
Gene Sequence
Download FASTA Hide Seq
>PCF11 YDR228C
ATGGATCACGACACAGAAGTTATAGTCAAGGATTTCAACAGTATTCTTGAAGAATTAACT
TTTAACTCGAGACCCATTATTACCACTCTCACGAAGTTAGCAGAAGAAAACATTTCGTGT
GCTCAATATTTTGTTGACGCCATTGAGAGTAGAATTGAAAAATGTATGCCTAAGCAGAAG
CTATACGCTTTTTATGCCTTGGACTCCATTTGTAAGAATGTTGGCAGCCCATACACAATC
TACTTCAGTAGAAATTTGTTTAACTTGTACAAAAGAACATACTTATTGGTGGACAACACC
ACAAGAACAAAACTCATCAATATGTTTAAGCTTTGGTTGAATCCTAATGACACCGGCCTG
CCTCTGTTTGAAGGCTCAGCACTGGAGAAAATTGAACAGTTTTTAATAAAGGCCAGTGCT
CTCCACCAGAAAAACCTGCAAGCAATGTTACCAACTCCGACTGTTCCCCTCCTATTAAGA
GACATTGATAAATTAACTTGTTTAACTAGTGAAAGGCTAAAGAATCAACCAAATGATGAA
AAATTAAAAATGAAACTGTTGGTTTTATCTCAGTTGAAACAAGAACTGAAAAGAGAAAAA
CTAACTCTCAATGCTCTGAAACAAGTTCAAATGCAACTAAGGCAGGTCTTCTCACAGGAC
CAACAAGTTTTGCAGGAAAGAATGAGGTATCACGAACTTCAGCAGCAACAGCAACAACAG
CAGCAACAGCAACAACAACAACAGCAGCAGCAGCAGCAGTATCACGAAACTAAGGATATG
GTCGGTTCTTACACACAAAACTCTAATTCAGCGATTCCATTGTTTGGAAATAATTCAGAT
ACAACGAACCAACAGAATTCTTTATCTTCCTCTCTTTTTGGTAATATTTCTGGCGTTGAA
TCTTTTCAAGAAATTGAGAAAAAAAAGTCCCTAAACAAAATCAATAACCTCTATGCATCT
CTTAAGGCTGAAGGGCTCATATATACTCCACCAAAAGAATCCATCGTAACGCTTTATAAA
AAGCTAAATGGACACTCAAACTACTCTCTTGATTCACACGAAAAACAATTGATGAAGAAC
CTGCCAAAGATACCCTTATTAAATGATATTCTTTCTGACTGCAAAGCTTATTTTGCCACG
GTTAACATCGACGTTTTGAATAACCCATCCCTGCAGCTGTCCGAACAAACTCTTCTTCAA
GAAAATCCCATCGTCCAAAATAATCTTATTCACTTATTATACCGATCCAAGCCAAATAAA
TGTAGCGTGTGTGGTAAGAGATTTGGCAACTCAGAAAGTGAAAAACTACTACAAAATGAG
CATTTGGACTGGCATTTCAGAATAAATACAAGAATTAAGGGATCACAAAACACAGCAAAT
ACAGGCATAAGCAACTCTAACTTAAATACAACTACCACAAGGAAAAATATTCAATCAAGA
AACTGGTATTTGAGTGACTCTCAATGGGCAGCCTTCAAAGATGATGAAATTACCTCCACA
AAGCATAAAAATGATTATACTGATCCGCATGCCAATAAAAATATCGATAAAAGTGCCCTA
AATATTCACGCTGATGAAAATGACGAAGGCTCTGTAGACAACACTTTAGGAAGTGATAGA
AGTAACGAGTTGGAAATACGGGGAAAATATGTTGTTGTACCAGAAACTTCACAAGATATG
GCCTTCAAATGTCCAATTTGTAAGGAAACCGTTACTGGCGTTTATGATGAAGAATCTGGT
GAATGGGTTTGGAAAAATACTATTGAAGTGAATGGCAAATATTTCCACTCGACATGTTAT
CATGAAACGTCGCAAAATTCAAGCAAATCTAATAGTGGCAAGGTCGGTTTGGATGACTTA
AAGAAATTGGTCACAAAATAA Promoter Sequence
Download FASTA
>PCF11 YDR228C
GCTCCGTATTATTGTCAGGCATATCCGATTTCTCTTCCTGTTACTTTCTTTAACAATATT
TTATTCCTTGGTGAAATTTAATTGACCCTTTATTCAGAATATATACTTCTATTGTATGGA
TATGGTTTTTTTCCACTTAATGTTTAGCATAAATTTCCATCTCACCCTTTTCTTGTAACA
TATCGCCCAATATTTTTTTCTTTTGCCCGCATTGACCATTTTTTCCTGTAAAACGAGTAA
TGTGAGCAGTAGAATAAGTGTATATCATCCGTTAAATAAGGCGCAATCTACCGAAGTTTG
AGATCTAACTCAAGTTTTTATAAATTAGATACGTTTTTCCTTACTATTCTACATGAGATG
GCCATTAGCATGAGATGACTTCAATACGCACTTCTGTTGGAACGCAGATAGGATGTTTAC
ACTCGTCTGCTCTATTCTTTGTACTTTCAATAGAGCAAAGCAAGTGGTACCAATGAAGAG
AAGGCCCAGCTGTTTTATTCCAGCGGCGAAGAAGTCTAGCCTATTCCTAATGTATTAGTA
CAGCTATACAGAACTTTCTCAGTCTAATTTTTGATGTACTTTTATACATAGATTTACACA
CTTTTCAAAACGTACTTACGTAGTCGGTTCAAGGGATACACCAATTTAGCCAATGAAGCT
GGGCCCCAAGTGATCAGAGTTTCGTAATTGAGCTAGGATTTGCTGCTTTTTATTCCCTTT
ATCACCAAATGGTATTACCTAGTGCATCTAAGTTTTAGTTTACCCGGGCGAATTTTTTTT
AAGGACTCGACGCATTGGATGAGAACTTGGCCTAAGGCATGGGAAGAAAGCGAAATTTCA
AAAATTAATGAGACAATGTTGTTCTACTGTTAAGGGTTTAGTAGTTTAAAAGTCTCTCTT
TCAATTTTGCATTGCAAAGAATTACCAGGACAATTTTCGGAGCAGTTAAGAAAACTGTAC
TTGAAAACACTAGGTCTATTTGTAATACTCTCTTTTCATT
Chr coordinates
Chr IV from 923806-921926
