Yeastract
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YEASTRACT+ INESC-ID IST IBB
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Locus Information

Standard Name SKI2
Systematic Name YLR398C
Strain S288c
Description Ski complex component and putative RNA helicase; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, SKIV2L, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome
External sources Open in SGD external link
Open in KEGG external link
Gene Sequence
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>SKI2 YLR398C
ATGTCTGAGGGATTCAGTAGCAGTTCCATACAGGAATTATATCAATCGTTAAAAGAAATC
ACTAACAACGCAGACGTAGAGCTTTTCGAAGATCGCATTACTAAATTAGATTTTGAGAGC
ACCGATGAACCAAAGCATGCAAATGATATCATAAAGGATAGATTTTTGAGACCTTCTAAT
GCTCTTCCTTGGAGCTTGTTGGACATGGTCCAAGACGTTCCACATACGTCTTCTCCAGAA
GATTGCTCTGGTAAACTAGATTACAAGGAATTGCTGAAAGTCCCGGACCCAATTAATAGA
ACATCATACCAGTTTAAAAGAACTGGGTTAGAAGGTAAAATTTCAGGCTACAAAGAAGAG
GTTGATTTGAAGGAAGTTGCAAATGCCAATGCATCAAATTCACTGTCGATTACGAGAAGT
ATCAACCATAACCAAAACTCAGTAAGGGGTTCTACAGCGCAATTGCCTTTCACACCAGGC
GGAATTCCCATGAAATCTGTCAAGACAGATTCAGAACAAAATGGATCTTCTACAATGGCC
AACGCTACTAAATTGTTACACAAGGATGGTCAAGGTTTATTCGATATTCCAGAGGGTATG
AATAGAGGCATTAAGCCGATGGATTCTCCAGCTGAAAATGAGGATCAAAACGGACAGTTC
AAAGAATTGAAACAGCTAAATGAGATAGATAATGAATTAGACATAAGGATTGAGGCGAAC
GAGGCAAAGTTAAAAGAGGAGGAAAAATCTGCCAAGTCAATTTCTGAAGAAATTATGGAG
GAAGCCACTGAAGAAACGACTGCCGATAATGCTGATGATGCCGAAATCGATGAACTATTA
CCAATTGGAATAGACTTTGGCAGAACTAAACCAGTTTCGAAAAGTGTTCCTGTTAAAAAG
GAATGGGCCCATGTTGTTGATTTGAACCATAAGATCGAAAATTTCGATGAGTTGATTCCA
AACCCCGCTAGATCGTGGCCTTTTGAATTGGATACATTTCAAAAGGAAGCCGTCTATCAT
CTCGAACAAGGTGATTCCGTATTTGTTGCCGCCCACACATCTGCTGGTAAAACTGTTGTT
GCAGAATACGCAATTGCCATGGCACATAGAAACATGACTAAAACTATATATACATCACCC
ATTAAAGCCTTATCCAATCAAAAATTCCGAGACTTTAAAGAAACTTTTGACGATGTTAAT
ATTGGGTTGATTACTGGTGATGTGCAAATTAATCCGGATGCTAACTGTTTGATTATGACG
ACCGAAATTTTAAGATCAATGCTTTATAGAGGTGCCGATTTGATCAGAGATGTAGAGTTT
GTCATTTTCGATGAAGTTCACTACGTTAATGATCAAGACCGTGGTGTTGTCTGGGAAGAA
GTTATTATTATGCTTCCACAGCATGTCAAGTTTATCTTATTATCTGCCACCGTTCCTAAC
ACTTATGAGTTTGCTAATTGGATTGGAAGAACTAAGCAAAAAAATATTTATGTCATTTCC
ACACCAAAAAGACCCGTTCCATTGGAAATAAATATATGGGCTAAAAAGGAACTGATACCG
GTTATTAATCAAAATTCAGAATTTTTAGAAGCTAATTTCAGGAAACATAAAGAGATTCTA
AATGGGGAGAGTGCAAAAGGGGCTCCTTCAAAAACTGACAACGGGAGAGGTGGATCCACA
GCAAGAGGGGGCCGTGGTGGATCCAATACTCGAGATGGAAGAGGAGGCCGTGGTAATTCA
ACACGTGGAGGTGCCAACCGTGGAGGTTCAAGAGGTGCTGGCGCAATTGGCTCCAACAAG
CGTAAGTTTTTCACTCAAGATGGTCCTTCGAAAAAAACATGGCCCGAAATTGTCAATTAC
CTAAGGAAAAGAGAGCTTCTACCAATGGTTGTTTTCGTATTTAGTAAAAAGAGGTGCGAG
GAATATGCTGACTGGTTGGAGGGAATTAACTTCTGCAACAATAAGGAAAAATCACAAATC
CACATGTTTATTGAGAAGTCGATTACTCGTTTGAAAAAAGAGGATAGAGATTTGCCTCAA
ATTCTTAAAACCAGATCATTACTTGAACGTGGTATAGCTGTTCATCATGGGGGGCTATTG
CCCATTGTCAAGGAGTTGATCGAAATATTATTTTCCAAGGGTTTTATCAAAGTTTTATTT
GCAACAGAAACTTTTGCCATGGGTTTGAACCTTCCCACAAGAACAGTTATCTTTAGCAGC
ATCCGTAAACATGATGGTAATGGATTAAGAGAACTGACTCCAGGTGAGTTTACCCAAATG
GCTGGTAGAGCTGGTAGAAGGGGCTTGGATTCCACTGGTACAGTCATTGTGATGGCATAT
AATAGTCCTTTATCTATTGCTACGTTCAAAGAAGTAACGATGGGTGTTCCGACGAGGTTG
CAGTCTCAGTTTAGATTAACATACAATATGATATTAAATCTTTTAAGAATTGAGGCGTTG
AGAGTTGAAGAAATGATCAAGTATTCTTTTAGTGAGAATGCCAAAGAAACTTTACAACCT
GAACATGAAAAACAAATCAAAGTATTACAAGAGGAATTACAAACCATAGAGTACAAAAGT
TGTGAAATCTGTGATAATGATATCGAAAAGTTTTTGGAATTGATGCTGGCATATAAGGAG
GCAACAGTCAACCTAATGCAAGAAATGGTTAAATCGCCTTCGATATTGCATATCTTGAAA
GAGGGCAGACTCGTTGCTTTTAGGGACCCCAATGATTGCTTGAAATTAGGATTTGTATTT
AAAGTTTCTCTGAAGGATGCTGTTTGTGTCATTATGACGTTCACAAAACCATACAAACTC
CCAAATGGTGAGCCAAATCATTTAATATACTTTCCAAAAGCGGATGGATACAGAAGAAGG
AACTTCCCTAAATTCCAGAAGACTGATTTTTATATGGAAGAAGTTCCTGTGACGGCTATT
GAAGTGATCACTAAACGCAAGTTTGCCGCACCCTTGGGAAAAGTGATTAAAAAGGATGTT
GCCGCTTTGAACGAGTTTAACGCTGAAACAAATAACATTTTGGACGGCAAAACGCTAAAA
GAAGCAATTAACATTGAAAAGCAAGGTTTAAAAATTCACCAAATATTGTTAGACCGTACA
AATATAAGGGATGAGATATTCAAACTAAAAAGCATTAAATGTCCCAACCTAAGCCAACAC
ATTGTTCCCAAGTTTAAGGCGCATGTAATTAAAAAGAAAATTGAAGAATTGTACCATTTG
ATGTCTGACCAAAATCTGAGCTTACTACCCGATTATGAAAAGAGATTGGCTGTTCTGAAA
GACACTGAATTTATCGACCAAAACCACAACGTGCTGTTAAAAGGTAGAGTGGCATGTGAA
ATTAATTCTGGTTATGAGTTAGTTTTAACTGAATTAATTTTAGACAACTTTTTAGGAAGC
TTTGAACCTGAAGAGATTGTAGCCTTATTATCAGTATTTGTTTATGAGGGGAAAACCAGG
GAAGAGGAGCCTCCTATTGTCACACCAAGGCTAGCAAAGGGTAAACAAAGAATTGAGGAA
ATTTACAAGAAAATGCTTTGTGTTTTCAATACGCATCAGATTCCATTAACTCAGGATGAA
GCTGAGTTTTTGGACAGAAAAAGGTTTGCCATGATGAATGTGGTGTATGAGTGGGCCCGT
GGTTTATCATTCAAAGAAATCATGGAAATGAGCCCCGAGGCTGAAGGTACTGTAGTCAGA
GTTATCACTTGGCTAGACGAAATTTGCCGCGAAGTTAAGACTGCCTCTATTATTATTGGT
AATTCCACATTACATATGAAGATGAGCAGGGCTCAAGAGTTGATTAAGAGAGATATTGTT
TTCGCCGCAAGTTTGTATTTATAG
Promoter Sequence
Download FASTA
>SKI2 YLR398C
AGTAGTGACATATGATATGAAACGTATCATTACAGAGAGGATCAATGATTTACCAACTTC
CAAATTAGAAAGAGCAATCGACATAATAAAAAAATCCATGCCCAATATTTCTGAAGACGA
TGAAGTAGAACTTGACCTCGACACTTTAGATAATCACACCATCTTAACATTGTACAACAC
TTTCTTTAGACAATATGAAAGCTCATCCGGTGCTTCTAACGGTTTGGACGGTACTTCAGG
TGTTACGCGAGATGCTTCGTCCTTGTCGCCTACAAGTGCGGGAAGCAGAAAGAGAAGATC
TAAGGCATTAAGCCAAGAGGAGCAGAGTAGGCAGATAGAAAAGATAAAAAATAAACTAGC
TATCTTAGACAGTGCTTCACCTCTGAGCCAAAACGGCTCCCCAGGCCAAATTCAAAGCGC
TGCACACAACGGGTTTTCCTCATCTTCAGATGACGATGTTAGCAGCGAAAGTGAAGAAGA
GTGACTGAATTTTGAATTTGATTATCTTCAACGACTGAGAAGAATGAGCACCATTTTGAT
ATTTTGATTAATTAAGTGGTAATCTTAAGCTCATATACAAAAAGGGAAGGAAAAAAAATA
AAGATAGAAAAGATCTTAGGAACGGATAGAGGTTTGAAAAAGGAATAACAGGTAATTTTT
CATTTTCATATCGGTTGTAACATTATAAAGCTCACAAATTTAAAACAAAAAAAAACATAA
ACCTAACAAGGTTAATCATTTGCACATGATCTCATCATATAGATCAATTCATAATCTATA
TAATAATGAATAATTAGAATAAAAATTTCCTCTTGTCTCAGAACGCCCATCGGATGGCAT
AACTTTAGTTAATGATATCACGACGGACGAAGTATTGAAAGACAACCTAACCTGTTCATC
AATTTAAAAGTCAACGCAGAAACTATAATACATTGCCACATAGTTCTTTCCGATATGAAC
AACCTAACTCACAAAATTTACTGTACTAATACTAATTTAT
Chr coordinates Chr XII from 919019-915156
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