Locus Information
Locus Info
Protein Info
GO Info
Orthologs
Standard Name
RAT1 Systematic Name
YOR048C Alias
HKE1, TAP1, XRN2 Strain
S288c Description
Nuclear 5' to 3' single-stranded RNA exonuclease; involved in RNA metabolism, including rRNA and snoRNA processing, as well as poly (A+) dependent and independent mRNA transcription termination; required for cotranscriptional pre-rRNA cleavage; displaces Cdk1p from elongating transcripts, especially as RNAPII reaches the poly(A) site, negatively regulates phosphorylation of the CTD of RNAPII, and inhibits RNAPII transcriptional elongation External sources
Open in SGD
Open in KEGG
Gene Sequence
Download FASTA Hide Seq
>RAT1 YOR048C
ATGGGTGTTCCGTCATTTTTCAGATGGCTATCTCGAAAATATCCAAAGATCATATCCCCA
GTATTGGAAGAGCAACCTCAGATAGTCGACGGTGTCATATTGCCGTTGGATTATTCCGCC
TCAAATCCAAACGGTGAGTTAGACAACTTGTATTTGGATATGAATGGTATTGTTCATCCA
TGTTCGCACCCAGAAAACAAACCGCCTCCAGAGACTGAAGATGAAATGCTTTTGGCAGTT
TTTGAATATACCAATCGTGTGTTAAATATGGCTAGACCACGCAAGGTACTTGTTATGGCT
GTTGATGGTGTTGCTCCTCGTGCCAAAATGAACCAGCAGAGAGCGCGTAGATTTAGGAGT
GCTAGGGATGCTCAGATTGAAAACGAAGCCAGGGAAGAAATTATGAGACAGCGAGAAGAA
GTTGGTGAGATAATCGATGATGCCGTCAGGAACAAGAAAACTTGGGATTCAAATGCGATC
ACTCCAGGCACCCCATTTATGGATAAGCTTGCCGCGGCCCTCCGTTATTGGACAGCATTT
AAACTGGCCACTGACCCTGGTTGGAAAAACCTGCAGGTGATTATCAGTGACGCCACCGTC
CCAGGTGAAGGTGAGCACAAAATAATGAATTTCATTAGGTCTCAAAGAGCTGATCCTGAA
TATAATCCCAACACAACGCACTGTATATACGGTTTGGATGCTGATTTAATTTTTTTGGGC
CTTGCCACTCATGAACCACATTTTAAAATTCTAAGAGAAGATGTTTTTGCTCAAGACAAT
CGGAAAAGAAATAACTTAAAAGATACTATAAATATGACTGAAGAAGAAAAACAATTTCTC
CAAAAACAAAATTCCGAACAACCTTTCTTGTGGCTGCACATAAATGTTTTGAGGGAATAC
TTGTCCGCTGAGTTATGGGTTCCGGGTCTTCCATTTACATTTGATTTAGAAAGGGCTATC
GACGATTGGGTTTTCATGTGCTTTTTCTGTGGTAATGACTTTTTACCACATTTACCATGC
TTAGATGTCAGAGAAAATAGTATTGATATTCTCTTGGATATTTGGAAGGTAGTACTACCG
AAATTGAAAACGTACATGACCTGCGACGGTGTCTTGAACCTCCCTTCTGTTGAAACGCTA
TTGCAACACCTTGGCTCCCGTGAGGGGGATATCTTCAAAACTAGACATATTCAAGAAGCC
AGAAAGAAAGAAGCTTTTGAAAGAAGGAAAGCGCAGAAAAATATGTCAAAAGGTCAAGAC
AGGCATCCTACAGTAGCTACGGAGCAACTGCAAATGTATGACACACAAGGAAATTTAGCA
AAAGGTTCATGGAACTTGACCACCAGTGATATGGTAAGGTTGAAAAAGGAACTGATGCTT
GCGAACGAGGGGAACGAAGAAGCAATCGCCAAAGTTAAGCAACAGAGTGATAAGAACAAT
GAACTGATGAAAGATATCAGCAAGGAAGAAATTGATGATGCTGTTAGTAAGGCTAACAAA
ACTAATTTTAACCTTGCAGAAGTTATGAAACAGAAAATAATAAATAAGAAACACCGTCTT
GAAAAGGATAATGAAGAGGAAGAAATTGCTAAGGATAGCAAAAAAGTTAAGACAGAGAAA
GCGGAATCAGAGTGCGATCTCGATGCAGAGATCAAAGATGAGATTGTGGCTGACGTAAAC
GACAGGGAAAACTCTGAAACTACAGAAGTATCAAGAGATTCACCAGTCCACAGCACAGTG
AATGTCAGCGAAGGTCCCAAAAATGGGGTCTTTGATACAGATGAATTTGTCAAACTATTC
GAACCTGGTTACCACGAAAGATATTACACAGCTAAATTTCACGTTACTCCTCAAGATATT
GAACAGTTAAGAAAAGATATGGTAAAATGCTATATCGAAGGGGTCGCCTGGGTACTAATG
TATTACTATCAAGGTTGTGCCTCTTGGAATTGGTTCTATCCGTACCATTATGCTCCTCTG
GCAACAGATTTCCATGGGTTTTCTCACTTGGAGATAAAGTTCGAAGAAGGTACTCCATTT
TTACCTTACGAACAATTGATGAGTGTTTTACCAGCTGCATCTGGCCATGCTTTGCCAAAA
ATTTTCCGGTCTTTGATGTCTGAACCTGACTCTGAAATCATTGATTTTTATCCTGAAGAA
TTTCCCATAGATATGAATGGTAAGAAGATGTCCTGGCAAGGCATAGCGTTGCTACCATTC
ATCGATCAGGATAGACTGTTAACAGCTGTTCGTGCACAATATCCTTTACTTTCTGATGCT
GAGAGGGCAAGAAATATTCGCGGAGAACCTGTTTTATTAATAAGTAACAAGAATGCTAAT
TATGAGAGGTTTTCGAAGAAATTATACTCAAAGGAAAACAACAACAACAATGTTGTTGTG
AAGTTTCAACACTTCAAGAGTGGTTTAAGTGGTATTGTATCAAAGGACGTTGAAGGTTTC
GAATTAAATGGGAAAATTGTATGTCCGATTCAAGGTGGGTCACTGCCAAATTTATCTACC
ACCTTGATTTTAAAGATGTCCTATAGATTAATTCCGTTGCCATCGAGAAATAAGTCTATT
ATACTGAACGGGTTCATTCCGTCAGAACCGGTACTAACAGCATATGACCTTGATTCCATA
ATGTACAAGTATAATAACCAAAATTACTCCCGTCGCTGGAACTTTGGTAATGATTTGAAG
CAAAATATTGTTCCAGTAGGACCAAAGGGTATTACTCAGTACAAACCAAGAACTGGTGGC
TATCGAGCATTCTTTTATTTTGCTGAGCTCAGTAGAAATAATGTCCAACCCGCCCACAAC
TATGGTAGGAATAGCTACAACAGTCAACCCGGCTTCAACAATAGCAGGTATGATGGTGGA
AACAATAATTACAGACAAAATTCAAATTACAGGAACAATAACTATTCCGGAAATAGAAAT
AGTGGACAGTACAGCGGCAACAGCTACTCTCGGAATAACAAGCAAAGTCGGTATGACAAT
TCAAGAGCAAATAGGCGTTAG Promoter Sequence
Download FASTA
>RAT1 YOR048C
ATGTCAATCTGATCGTTCATATGCATTTTTCAATTCTTACTTTTTTTCTCGAAGTTCCCG
ACTATGTTCTGTTTATTTTTTCTCCTATTCAAAAGAACCGGACAGCATTTTTACTTCCTT
ATATTTCGACATCGTAATATGTACATTTTTTAGTTCACAAGTATTTTTCCCCTTTCAATG
CTTTAATCAGCCTTCAACGTCATACATACTTTCTATTTTGTTCCTGTGCCATCGTATAAC
TTTCCTCGTTTAGTGTTTTCGCCTCAGCTTAATGTAGATCACTGTTTTGACGTTCTTCCA
TTTTTGGGAACGAACTAAACTAAAAAAAAGAAAACTACAGAGTTTCCCATAGAGAACAGA
AAATCCGCTATCGGCAGCTTATAGGGTCATATAATTATGGCGCACATAAGGAAAATAAAT
TTATTTGAATCAATCAACAGACCTATCTGTTGATATATGAAAGAGAGCAGGAGCGTTAGT
TTACCTCCATAAACAGTAAAATTAAAGCAAAAAAGCGTAACTGCTGATTGAAGCCTATAT
CACCGGGCTAAAATCTTATATCGGTTAAGAAAGTGATTAATTTATAGATATGTTCACGAA
ATCTTTTCTATTCAAAGATTCACGAATTTTACTCGATTTTTATAGTATACTGAAACAAGT
AGTTGTAAAATCAATTCACCAAAAAAGCTTTCCCCATCTCTGATGAAAAACTACGAAAAG
TTTACTATCACATAATATCGGAAGTACGTTTTTAAGGCACTGCAATGTATTTTATAATCT
TGAACATTTGGAGGTATATTACCTTACTTTCTCATCAGGTTGTATATTTGAGCGTCTCGG
GAATGATAAGTCGGGTAACGAGAGTATCTAGATAAGATTTTCAGCTATGGCAATAAAAAA
CCAAACCTCATCGATGAACCTATTACAACATAAAGACATCCCGTAATAATTAGTGAGACA
GGTTCTTCAAGGAAGTGCTACAGCCAAGTTTCGTAATATA
Chr coordinates
Chr XV from 421650-418630
