The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Hap4p
|
YBL045C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Schuurmans JM et al., FEMS Yeast Res, 2008 Feb;8(1):26-34Schuurmans JM et al., FEMS Yeast Res, 2008 Feb;8(1):26-34 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
CEN.PK113-7D |
wt versus Tf overexpression 0.67 %YNB, 2% glucose and 0.1 M phtalic acid pH 5 30.C mid exp cells |
PubMed
Imamura Y et al., PLoS One, 2015 Jun 18;10(6):e0130397Imamura Y et al., PLoS One, 2015 Jun 18;10(6):e0130397 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
YPEG (1% yeast extract, 2% peptone, 3% EtOH, 3% Glycerol) |
PubMed
Galdieri L et al., Mol Cell Biol, 2016 Jan 19;36(7):1064-77Galdieri L et al., Mol Cell Biol, 2016 Jan 19;36(7):1064-77 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
Cells were grown at 28.C in YEP medium (1% yeast extract, 2% Bacto peptone) containing 5% glucose |
PubMed
Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
|