The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Yrr1p
|
YBR008C
|
PubMed
Le Crom S et al., Mol Cell Biol, 2002 Apr;22(8):2642-9Le Crom S et al., Mol Cell Biol, 2002 Apr;22(8):2642-9 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Yrr1-GAD chimera cells were cultivated in the presence of 2% galactose to induce protein expression |
PubMed
Lucau-Danila A et al., J Biol Chem, 2003 Dec 26;278(52):52641-50Lucau-Danila A et al., J Biol Chem, 2003 Dec 26;278(52):52641-50 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
BY4742 |
Minimal synthetic medium; early-log phase; Galactose induction; YRR1-GAD is chimeric protein |
PubMed
Teixeira MC et al., Biochem Biophys Res Commun, 2008 Mar 7;367(2):249-55Teixeira MC et al., Biochem Biophys Res Commun, 2008 Mar 7;367(2):249-55 |
Indirect |
lacZ - wt vs TF mutant |
Positive |
S288c |
Exponential-phase cells cultivated in minimal medium supplemented with 2 mg/mL Mancozeb |
PubMed
Teixeira MC et al., Mol Biosyst, 2010 Dec;6(12):2471-81Teixeira MC et al., Mol Biosyst, 2010 Dec;6(12):2471-81 |
Direct |
lacZ - wt vs mutant promoter sequence |
N/A |
S288c |
Mancozeb stress |
PubMed
Galdieri L et al., J Mol Biol, 2012 Jan 20;415(3):464-74Galdieri L et al., J Mol Biol, 2012 Jan 20;415(3):464-74 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
benomyl stress |
PubMed
Kodo N et al., Biochem Biophys Res Commun, 2013 Apr 26;434(1):42-7Kodo N et al., Biochem Biophys Res Commun, 2013 Apr 26;434(1):42-7 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
SD medium |
PubMed
Gallagher JE et al., Genes Dev, 2014 Feb 15;28(4):409-21Gallagher JE et al., Genes Dev, 2014 Feb 15;28(4):409-21 |
Direct |
ChIP-seq |
N/A |
S288c |
YPGlycerol medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
PubMed
Ottilie S et al., Commun Biol, 2022 Feb 11;5(1):128Ottilie S et al., Commun Biol, 2022 Feb 11;5(1):128 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
EAW |
YPD, 30.C |
|