S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Pho4p	YDR481C	PubMed BarbariÄ‡ S et al., Nucleic Acids Res, 1992 Mar 11;20(5):1031-8	Direct	EMSA	N/A	S288c	in vitro
		PubMed Hayashi N et al., Mol Cell Biol, 1991 Feb;11(2):785-94	Direct	EMSA	N/A	S288c	in vitro
		PubMed MunsterkÃ¶tter M et al., J Biol Chem, 2000 Jul 28;275(30):22678-85	Direct	lacZ - wt vs mutant promoter sequence	Positive	S288c	Phosphate depletion
		PubMed Ogawa N et al., Mol Biol Cell, 2000 Dec;11(12):4309-21	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Exponential phase cells cultivated in YPD
		PubMed Huang D et al., Mol Cell Biol, 2002 Jul;22(14):5076-88	Indirect	Microarray analysis - wt vs TF mutant	Positive	BY263	Cells grown to log phase in YPD medium
		PubMed Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF mutant	Positive	N/A	Cells grown in synthetic medium supplemented with 2% dextrose
		PubMed Nishizawa M et al., PLoS Biol, 2008 Dec 23;6(12):2817-30	Direct	ChIP	N/A	S288c	YNB medium without phosphate + 2mM (high Pi)
		PubMed Aow JS et al., Nucleic Acids Res, 2013 May;41(9):4877-87	Direct	ChIP	N/A	S288c	low phosphate
		PubMed Tsang F et al., J Biol Chem, 2015 May 15;290(20):12753-64	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Control
		PubMed He et al., Elife, 2017;6(0):e25157He et al., Elife, 2017;6(0):e25157	Indirect	RNA-seq - wt vs TF mutant	Positive	EY0057 pho80DELTA	EY0057 pho80DELTA; Minimal medium; mid-log phase
		PubMed Gurvich Y et al., PLoS Biol, 2017 Dec 13;15(12):e2002039	Indirect	RNA-seq - wt vs TF mutant	Positive	BY4741	BY4741; SC medium; Phosphate(i) starvation condition; 30.C; mid-log phase
			Indirect	RNA-seq - wt vs TF mutant	Positive	BY4741 PHO4SA12346 allele	BY4741 PHO4SA12346 allele ; SC medium; Low P(i) concentration; 30.C; mid-log phase
			Indirect	RNA-seq - wt vs TF mutant	Positive	BY4741 PHO84-constitutive	BY4741 PHO84c; SC medium; yeast cell recovery into 20mM P(i) from low P(i); 30.C; 2h growth