S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Gln3p	YJR152W	PubMed Cooper TG et al., J Bacteriol, 1990 Feb;172(2):1014-8	Indirect	Northern blot - WT vs TF mutant	Positive	AM100	Minimal glucose proline medium
		PubMed Cox KH et al., Yeast, 1999 Jun 15;15(8):703-13	Indirect	Microarray analysis - WT vs TF mutant	Negative	TCY1	Wickerham's minimal medium with 0,6% glucose and 0,1% of proline
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Hirasaki M et al., Gene, 2008;():Hirasaki M et al., Gene, 2008;():	Indirect	RT-PCR - WT vs TF mutant	Positive	S288c	YPAD + 14mM Caffeine 1h
		PubMed Georis I et al., J Biol Chem, 2008 Apr 4;283(14):8919-29	Indirect	Northern blot - WT vs TF mutant	Positive	S288c	glutamine
		PubMed Georis I et al., Genetics, 2009 Mar;181(3):861-74	Direct	ChIP	N/A	25T0b, FV090, FV069, FV076, FV041, 03803c	YNB-glutamine medium treated with rapamycin (0.2 microg/ml) for 30 min
		PubMed Georis I et al., Genetics, 2009 Mar;181(3):861-74	Indirect	RT-PCR - WT vs TF mutant	Positive	FV022	YNB-glutamine medium treated with rapamycin (0.2 microg/ml) for 30 min
		PubMed Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911	Indirect	Microarray analysis - WT vs TF mutant	Positive	EG328-1A	RNA prepared from wt and DELTAgcn2DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
			Indirect	Microarray analysis - WT vs TF mutant	Positive	EG328-1A	RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
			Indirect	Microarray analysis - WT vs TF mutant	Positive	EG328-1A	RNA prepared from wt and DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
		PubMed Georis I et al., Mol Cell Biol, 2011 Jan;31(1):92-104	Direct	ChIP	N/A	S288c	Rapamycin treatment
		PubMed HernÃ¡ndez H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64	Direct	ChIP	N/A	S288c	3-aminotriazole
		PubMed Georis I et al., J Biol Chem, 2011 Dec 30;286(52):44897-912	Indirect	RT-PCR - WT vs TF mutant	Positive	S288c	Rapamycin treatment
		PubMed Fayyadkazan M et al., Microbiologyopen, 2014 Jun;3(3):271-87	Indirect	RT-PCR - WT vs TF mutant	Positive	S288c	cells grown in YPD medium and then treated with rapamycin o transferred to proline medium.
		PubMed Numamoto M et al., J Biosci Bioeng, 2015 Aug;120(2):121-7	Indirect	RT-PCR - WT vs TF mutant	Positive	S288c	DELTAgln3 carrying or not a plasmid pRS316-GLN3S391D-Myc13 incubated in YPDA medium, supplemented with 5 mM caffeine for 30 min
		PubMed Fayyad-Kazan M et al., Mol Microbiol, 2016 Jan;99(2):360-79	Indirect	RT-PCR - WT vs TF mutant	Positive	S288c	cells were grown in am or ammonium (1%) + glutamine (0.1% w/v) medium.
		PubMed GonzÃ¡lez J et al., Genetics, 2017 Nov;207(3):975-991	Direct	ChIP	N/A	CLA11-700	Cells grown to OD600 0.5 on MM with 2% glucose with VIL (valine plus isoleucine plus leucine) (catabolic conditions)
			Direct	ChIP	N/A	CLA11-700	Cells grown to OD600 0.5 on MM with 2% glucose with GABA