S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Stb5p	YMR315W	PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Hector RE et al., N Biotechnol, 2009;():	Direct	lacZ - wt vs mutant promoter sequence	Positive	S288c	SD medium
		PubMed Ouyang L et al., FEMS Yeast Res, 2018 Dec 1;18(8):	Direct	ChIP-exo	N/A	CEN.PK 113-5D	Nitrogen limitation
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Ethanol limitation
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Anaerobic glucose limitation
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Aerobic glucose limitation
			Indirect	RNA-seq - wt vs TF mutant	Negative	CEN.PK 113-5D	Nitrogen limitation
		PubMed Bergman A et al., FEMS Yeast Res, 2019 May 1;19(3):	Indirect	RNA-seq - wt vs TF overexpression	Positive	CEN.PK 113-5D	Minimal medium in batch culture on ethanol as C source
			Indirect	RNA-seq - wt vs TF overexpression	Positive	CEN.PK 113-5D	Minimal medium in batch culture on glucose
			Indirect	RNA-seq - wt vs TF overexpression	Positive	CEN.PK 113-5D	Minimal medium in steady-state continuous fermenter on glucose
		PubMed Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000	Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C