S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Aft1p	YLR136C	PubMed Foury F et al., J Biol Chem, 2001 Mar 16;276(11):7762-8	N/A		N/A	S288c	N/A
		PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Courel M et al., Mol Cell Biol, 2005 Aug;25(15):6760-71	Indirect	Microarray analysis - wt vs TF mutant	Positive	SCMC01	Iron-depleted conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ); 30.C.
		PubMed Dubacq C et al., Mol Genet Genomics, 2006 Feb;275(2):114-24	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium + 200mM hydroxyurea
		PubMed Batista-Nascimento L et al., Biochim Biophys Acta, 2013 May;1833(5):997-1005	Indirect	lacZ - wt vs TF mutant	Positive	S288c	Control
		PubMed Jaehnig EJ et al., Cell Rep, 2013 Jul 11;4(1):174-88	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	N/A
		PubMed Gil FN et al., Environ Microbiol, 2017 Feb;19(2):485-499	Indirect	RT-PCR WT vs TF deletion mutant	Positive	S288c	Alachlor
			Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	Alachlor
		PubMed Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	SD medium, mid exponential phase
			Indirect	RT-PCR - wt vs TF mutant	Negative	BY4741	Cells cultured to mid-exponential phase in SD medium with amino acid supplementation
			Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	Cells cultured to mid-exponential phase in SD medium
		PubMed Ramos-Alonso L et al., Metallomics, 2018 Sep 19;10(9):1245-1256	Indirect	RT-PCR - wt vs TF overexpression	Positive	BY4741	SC-ura exponential phase
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C