S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Aro80p	YDR380W	PubMed Iraqui I et al., Mol Cell Biol, 1999 May;19(5):3360-71	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	urea and tryptophan
		PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	SC medium; mid-log phase
		PubMed Chen H et al., Genes Dev, 2006 May 1;20(9):1150-61	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	low cell density and aromatic alcohol (tryptophol); cells inoculated in low ammonium dextrose medium for 4 h
		PubMed Workman CT et al., Science, 2006 May 19;312(5776):1054-9	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Lee K et al., Mol Microbiol, 2013 Jun;88(6):1120-34	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	BY4741 aro80DELTA cells cultured in YPD medium until early exponential phase and then treated with 0.2 microg mlâˆ’1 rapamycin (Rap) for 1 h.
		PubMed Kim B et al., Biotechnol Bioeng, 2014 Jan;111(1):115-24	Direct	RT-PCR - wt vs mutant promoter sequence	Positive	S288c	SC-Leu_Trp_Ura medium
		PubMed Lee K et al., Biochem Biophys Res Commun, 2013 Aug 16;438(1):43-7	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	YPD medium 39.C
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C