The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Fkh2p
|
YDR146C
|
PubMed
Althoefer H et al., Mol Cell Biol, 1995 Nov;15(11):5917-28Althoefer H et al., Mol Cell Biol, 1995 Nov;15(11):5917-28 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Zhu G et al., Nature, 2000 Jul 6;406(6791):90-4Zhu G et al., Nature, 2000 Jul 6;406(6791):90-4 |
Direct |
ChIP |
N/A |
W303 |
15, 30, 45, 60 min after release of G1 phase synchronization |
Indirect |
Northern blot - wt vs TF mutant |
N/A |
W303 |
0-180 min after release of G1 phase synchronization |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
W303 |
15, 30, 45, 60 min after release of G1 phase synchronization |
PubMed
Koranda M et al., Nature, 2000 Jul 6;406(6791):94-8Koranda M et al., Nature, 2000 Jul 6;406(6791):94-8 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Pic A et al., EMBO J, 2000 Jul 17;19(14):3750-61Pic A et al., EMBO J, 2000 Jul 17;19(14):3750-61 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
cell cycle periodic activation |
PubMed
Kumar R et al., Curr Biol, 2000;():Kumar R et al., Curr Biol, 2000;(): |
Indirect |
Gus - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Simon I et al., Cell, 2001 Sep 21;106(6):697-708Simon I et al., Cell, 2001 Sep 21;106(6):697-708 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shapira M et al., Mol Biol Cell, 2004 Dec;15(12):5659-69Shapira M et al., Mol Biol Cell, 2004 Dec;15(12):5659-69 |
Indirect |
Microarray analysis - wt vs TF mutant |
N/A |
S288c |
N/A |
PubMed
Pic-Taylor A et al., Mol Cell Biol, 2004 Nov;24(22):10036-46Pic-Taylor A et al., Mol Cell Biol, 2004 Nov;24(22):10036-46 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
Δfkh1 cells synchronized with α-factor (block and release of G1 phase) |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Freddie CT et al., Nucleic Acids Res, 2007;35(15):5203-12Freddie CT et al., Nucleic Acids Res, 2007;35(15):5203-12 |
Direct |
EMSA |
N/A |
S288c |
N/A |
PubMed
Yelamanchi SK et al., Mol Cell Biol, 2014 Feb;34(4):711-24Yelamanchi SK et al., Mol Cell Biol, 2014 Feb;34(4):711-24 |
Direct |
ChIP |
N/A |
S288c |
YPD |
PubMed
Ostrow AZ et al., PLoS One, 2014;9(2):e87647Ostrow AZ et al., PLoS One, 2014;9(2):e87647 |
Direct |
Chip-on-chip |
N/A |
S288c |
Unspecified medium, 23.C, synchronized with alpha-factor, hydroxyurea or nocodazole |
PubMed
Shi BJ, Biochem J, 2016 Nov 1;473(21):3855-3869Shi BJ, Biochem J, 2016 Nov 1;473(21):3855-3869 |
Direct |
ChIP |
N/A |
S288c |
Synchronous growth |
PubMed
Mondeel TDGA et al., Nucleic Acids Res, 2019 Sep 5;47(15):7825-7841Mondeel TDGA et al., Nucleic Acids Res, 2019 Sep 5;47(15):7825-7841 |
Direct |
ChIP-exo |
N/A |
BY4741 |
SC medium 30.C overnight |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
|