Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Fkh2p
|
YPR119W
|
PubMed
Althoefer H et al., Mol Cell Biol, 1995 Nov;15(11):5917-28Althoefer H et al., Mol Cell Biol, 1995 Nov;15(11):5917-28 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Madhani HD et al., Proc Natl Acad Sci U S A, 1999 Oct 26;96(22):12530-5Madhani HD et al., Proc Natl Acad Sci U S A, 1999 Oct 26;96(22):12530-5 |
Direct |
ChIP |
N/A |
S288c |
Exponential phase cells cultivated in YPD growth medium |
PubMed
Hollenhorst PC et al., Genetics, 2000 Apr;154(4):1533-48Hollenhorst PC et al., Genetics, 2000 Apr;154(4):1533-48 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Zhu G et al., Nature, 2000 Jul 6;406(6791):90-4Zhu G et al., Nature, 2000 Jul 6;406(6791):90-4 |
Direct |
ChIP |
N/A |
W303 |
15, 30, 45, 60 min after release of G1 phase synchronization |
Indirect |
Northern blot - wt vs TF mutant |
N/A |
W303 |
0-180 min after release of G1 phase synchronization |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
W303 |
15, 30, 45, 60 min after release of G1 phase synchronization |
PubMed
Koranda M et al., Nature, 2000 Jul 6;406(6791):94-8Koranda M et al., Nature, 2000 Jul 6;406(6791):94-8 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Pic A et al., EMBO J, 2000 Jul 17;19(14):3750-61Pic A et al., EMBO J, 2000 Jul 17;19(14):3750-61 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
cell cycle periodic activation |
PubMed
Kumar R et al., Curr Biol, 2000;():Kumar R et al., Curr Biol, 2000;(): |
Indirect |
lacZ - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Simon I et al., Cell, 2001 Sep 21;106(6):697-708Simon I et al., Cell, 2001 Sep 21;106(6):697-708 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shapira M et al., Mol Biol Cell, 2004 Dec;15(12):5659-69Shapira M et al., Mol Biol Cell, 2004 Dec;15(12):5659-69 |
Indirect |
Microarray analysis - wt vs TF mutant |
N/A |
S288c |
N/A |
PubMed
Pic-Taylor A et al., Mol Cell Biol, 2004 Nov;24(22):10036-46Pic-Taylor A et al., Mol Cell Biol, 2004 Nov;24(22):10036-46 |
Direct |
ChIP |
N/A |
S288c |
growth on galactose |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Sherriff JA et al., Mol Cell Biol, 2007 Apr;27(8):2848-60Sherriff JA et al., Mol Cell Biol, 2007 Apr;27(8):2848-60 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Voth WP et al., EMBO J, 2007 Oct 17;26(20):4324-34Voth WP et al., EMBO J, 2007 Oct 17;26(20):4324-34 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Veis J et al., Mol Cell Biol, 2007 Dec;27(23):8364-73Veis J et al., Mol Cell Biol, 2007 Dec;27(23):8364-73 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Casey L et al., Mol Biol Cell, 2008 Feb;19(2):608-22Casey L et al., Mol Biol Cell, 2008 Feb;19(2):608-22 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
W303-1A |
wt vs TF mutant |
PubMed
Pondugula S et al., Mol Cell Biol, 2009 Sep;29(18):4891-905Pondugula S et al., Mol Cell Biol, 2009 Sep;29(18):4891-905 |
Direct |
ChIP |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Sekiya M et al., Genes Genet Syst, 2009 Aug;84(4):269-76Sekiya M et al., Genes Genet Syst, 2009 Aug;84(4):269-76 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
YOC3191 |
fks1-1154 cells and fks1-1154 cells overexpressing FKH2 gene of each strain were incubated in YPGS (YPD with 2% galactose and 0.1% sucrose instead of 2% of glucose) at 25.C for 3h. G1 cells were isolated and cultured in YPGS containing 15 microh/mL nocodazole for 240min at 37.C |
PubMed
Darieva Z et al., Mol Cell, 2010 Apr 9;38(1):29-40Darieva Z et al., Mol Cell, 2010 Apr 9;38(1):29-40 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Linke C et al., Front Physiol, 2013;():Linke C et al., Front Physiol, 2013;(): |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
G2/M phase arrested cells |
PubMed
Yelamanchi SK et al., Mol Cell Biol, 2014 Feb;34(4):711-24Yelamanchi SK et al., Mol Cell Biol, 2014 Feb;34(4):711-24 |
Direct |
ChIP |
N/A |
S288c |
YPD |
PubMed
Edenberg ER et al., Mol Cell Biol, 2014 Feb;34(4):725-38Edenberg ER et al., Mol Cell Biol, 2014 Feb;34(4):725-38 |
Direct |
ChIP |
N/A |
S288c |
MMS |
PubMed
Ostrow AZ et al., PLoS One, 2014;9(2):e87647Ostrow AZ et al., PLoS One, 2014;9(2):e87647 |
Direct |
Chip-on-chip |
N/A |
S288c |
Unspecified medium, 23.C, synchronized with alpha-factor, hydroxyurea or nocodazole |
PubMed
Shi BJ, Biochem J, 2016 Nov 1;473(21):3855-3869Shi BJ, Biochem J, 2016 Nov 1;473(21):3855-3869 |
Direct |
ChIP |
N/A |
S288c |
Synchronous growth |
PubMed
Linke C et al., NPJ Syst Biol Appl, 2017 Mar 6;3(1):Linke C et al., NPJ Syst Biol Appl, 2017 Mar 6;3(1): |
Direct |
ChIP |
Positive |
BY4741 |
BY4741; YPD medium; 30.C; mid-log phase |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
BY4741 fkh2DELTA |
BY4741 fkh1DELTA; yeast cells treated with 5 microg/ml NOCODAZOLE; YPD medium; 30.C |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
BY4741 fkh1DELTAfkh2DELTA |
BY4741 fkh1DELTAfkh2DELTA; yeast cells treated with 5 microg/ml NOCODAZOLE; YPD medium; 30.C |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
BY4741 fkh2DELTA |
BY4741 fkh1DELTA; yeast cells treated with 75 mM Hydroxyurea; YPD medium; 30.C |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
BY4741 fkh1DELTAfkh2DELTA |
BY4741 fkh1DELTAfkh2DELTA; yeast cells treated with 75 mM Hydroxyurea; YPD medium; 30.C |
PubMed
Sukegawa Y et al., J Cell Sci, 2018 Jul 9;131(13):jcs219063Sukegawa Y et al., J Cell Sci, 2018 Jul 9;131(13):jcs219063 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288C hog1DELTAfkh2DELTA |
Strains with fks1 mutant allele (temperature-sensitive mutant); YPD medium; 37.C |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |