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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Condition
Gcn4p YAL068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAL067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAL065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAL064W-B PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAL064C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAL064W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YAL063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR089W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR089C-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR090C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR092C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR093C PubMed external link Belova IV et al., Genetika, 1992 May;28(5):11-8Belova IV et al., Genetika, 1992 May;28(5):11-8 Indirect Western blot - wt vs TF mutant Positive unknown N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR094W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR096W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR097W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR098W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR099C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR101C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YBR102C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR103C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR104W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR105C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR109C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR110W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR111C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR112C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR113W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
YBR114W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YBR115C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YBR116C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR117C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR118W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YBR119W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR120C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR121C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR122C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR123C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR124W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR125C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR126C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR127C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR128C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR130C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR131W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR132C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR133C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR134W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YBR135W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR136W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR137W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR139W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR140C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR141C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR142W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR143C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR144C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR145W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR146W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR147W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR148W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YBR149W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR150C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR151W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR152W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YBR153W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR154C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR155W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR157C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR158W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR159W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR160W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR162C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR162W-A PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR163W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR164C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR165W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YBR167C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR168W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR169C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR170C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR171W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR172C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR173C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR175W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR176W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR177C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR178W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YBR179C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR180W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR181C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR182C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR183W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR184W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR185C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR186W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR187W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR188C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR190W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR191W-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR192W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR193C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR194W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR195C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR196C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR197C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR198C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR199W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR200W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR201W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR202W PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR203W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR204C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR205W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR207W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR208C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YBR209W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR210W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR211C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR212W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR213W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YBR214W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR215W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR216C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR217W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR218C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR220C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR221C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Proteomics - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YBR222C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR223C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR225W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR227C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YBR228W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YBR229C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YBR230C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR231C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR232C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YBR233W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR234C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR235W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR236C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YBR237W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR238C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR239C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR240C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YBR241C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR242W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR243C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR244W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR245C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR246W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR247C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR248C PubMed external link Kuenzler M et al., J Bacteriol, 1993 Sep;175(17):5548-58Kuenzler M et al., J Bacteriol, 1993 Sep;175(17):5548-58 Indirect lacZ - wt vs TF mutant Positive S288c Minimal medium; mid-log phase
PubMed external link Springer C et al., J Biol Chem, 1996;():Springer C et al., J Biol Chem, 1996;(): Direct EMSA N/A S288c in vitro
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Albrecht TR et al., Mol Cell Biol, 2012;():Albrecht TR et al., Mol Cell Biol, 2012;(): Direct ChIP N/A S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR249C PubMed external link Paravicini G et al., Mol Cell Biol, 1989 Jan;9(1):144-51Paravicini G et al., Mol Cell Biol, 1989 Jan;9(1):144-51 N/A N/A S288c N/A
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Crisucci EM et al., Mol Cell Biol, 2012 Mar;32(6):1150-63Crisucci EM et al., Mol Cell Biol, 2012 Mar;32(6):1150-63 Direct ChIP N/A S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR250W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YBR251W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR252W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR253W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR254C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR255W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR255C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR256C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR257W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YBR258C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR259W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR260C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR261C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR262C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR263W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR264C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR265W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR267W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR266C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR268W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR269C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR270C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR271W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR272C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR273C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR274W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR275C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR276C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR278W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR279W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR280C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR281C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR282W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR283C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR284W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR285W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR286W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR287W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR288C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR289W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR290W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR291C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR292C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR293W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR294W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR295W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR296C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR297W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR298C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR299W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR301W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR302C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCL076W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCL069W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YCL065W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YCL064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCL063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCL061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCL057C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCL057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCL056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCL055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCL054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YCL049C PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCL047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCL044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCL041C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
YCL042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL040W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCL038C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL037C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCL034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCL032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL030C PubMed external link Li W et al., J Bacteriol, 1992 Jun;174(12):4148-56Li W et al., J Bacteriol, 1992 Jun;174(12):4148-56 Indirect lacZ - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Mountain HA et al., Yeast, 1991 Nov;7(8):781-803Mountain HA et al., Yeast, 1991 Nov;7(8):781-803 Indirect Northern blot - wt vs TF mutant Positive S288C Minimal medium + methionine
PubMed external link Arndt K et al., Proc Natl Acad Sci U S A, 1986;():Arndt K et al., Proc Natl Acad Sci U S A, 1986;(): Direct DNA footprinting N/A S288c in vitro
PubMed external link Lucchini G et al., Mol Cell Biol, 1984 Jul;4(7):1326-33Lucchini G et al., Mol Cell Biol, 1984 Jul;4(7):1326-33 Indirect lacZ - wt vs TF mutant Positive S288c log phase cells grown in SD medium supplemented with 10 mM 3-aminotriazole
PubMed external link Hinnebusch AG et al., Proc Natl Acad Sci U S A, 1983 Sep;80(17):5374-8Hinnebusch AG et al., Proc Natl Acad Sci U S A, 1983 Sep;80(17):5374-8 N/A N/A S288c N/A
PubMed external link O'Connell KF et al., Mol Cell Biol, 1995;():O'Connell KF et al., Mol Cell Biol, 1995;(): Indirect Northern blot - wt vs TF mutant Positive S288c Yeast cells were grown in SCM lacking aromatic amino acids. From each culture, an initial sample was removed and the remaining portion was adjusted to 1 mM 5-MT, after which additional samples were removed at the times indicated (0, 1h, 2h and 4h)
PubMed external link Mountain HA et al., Mol Microbiol, 1993 Jan;7(2):215-28Mountain HA et al., Mol Microbiol, 1993 Jan;7(2):215-28 Indirect Northern blot - wt vs TF mutant Positive F384 SC medium + aminotriazole
PubMed external link Dudley AM et al., Genetics, 1999 Apr;151(4):1365-78Dudley AM et al., Genetics, 1999 Apr;151(4):1365-78 Direct lacZ - wt vs mutant promoter sequence Positive S288c SD medium; mid-log phase
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Kim SJ et al., Mol Cell Biol, 2005 Dec;25(24):11171-83Kim SJ et al., Mol Cell Biol, 2005 Dec;25(24):11171-83 Indirect Northern blot - wt vs TF mutant Positive S288c exposure to sulfometuron methyl
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Joo YJ et al., Eukaryot Cell, 2009 Aug;8(8):1268-77Joo YJ et al., Eukaryot Cell, 2009 Aug;8(8):1268-77 Indirect Northern blot - wt vs TF mutant Positive S288c SC medium w/o histidine
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Herbig E et al., Mol Cell Biol, 2010 May;30(10):2376-90Herbig E et al., Mol Cell Biol, 2010 May;30(10):2376-90 Indirect RT-PCR - wt vs TF mutant Positive S288c sulfometuron methyl
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Knutson BA et al., Mol Cell Biol, 2011 Feb;31(4):818-31Knutson BA et al., Mol Cell Biol, 2011 Feb;31(4):818-31 Direct ChIP N/A S288c Galactose
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Brzovic PS et al., Mol Cell, 2011 Dec 23;44(6):942-53Brzovic PS et al., Mol Cell, 2011 Dec 23;44(6):942-53 Indirect RT-PCR - wt vs TF mutant Positive S288c sulfometuron methyl
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Lee JC et al., FEMS Yeast Res, 2013 Nov;13(7):618-34Lee JC et al., FEMS Yeast Res, 2013 Nov;13(7):618-34 Indirect Northern blot - wt vs TF mutant Positive S288c Cells grown to mid-exponential phase in SD min; addition of 100 mM L-serine
PubMed external link Qiu H et al., Genome Res, 2016 Feb;26(2):211-25Qiu H et al., Genome Res, 2016 Feb;26(2):211-25 Direct ChIP N/A S288c Cells grown in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600 = 0.6–0.8), and SM was added at 1 microg/mL for 30 min to induce Gcn4. 
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link González J et al., Genetics, 2017 Nov;207(3):975-991González J et al., Genetics, 2017 Nov;207(3):975-991 Direct ChIP N/A CLA11-700 Cells grown to OD600 0.5 on MM with 2% glucose with Glutamine (biosynthetic conditions)
Direct ChIP N/A CLA11-700 Cells grown to OD600 0.5 on MM with 2% glucose with VIL (valine plus isoleucine plus leucine) (catabolic conditions)
Direct ChIP N/A CLA11-700 Cells grown to OD600 0.5 on MM with 2% glucose with GABA
Indirect Northern blot - wt vs TF mutant Positive CLA11-700 MM medium with 2% glucose with glutamine (7 mM)
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YCL029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YCL028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCL026C-B PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL026C-A PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCL025C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCL018W PubMed external link Brisco PR et al., J Biol Chem, 1990 Jul 15;265(20):11667-75Brisco PR et al., J Biol Chem, 1990 Jul 15;265(20):11667-75 Direct EMSA N/A S288c N/A
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL011C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCL009C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCL008C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCL005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCL001W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YCR001W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCR002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCR003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR004C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR005C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR006C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCR007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR009C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCR011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR013C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR015C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR016W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR018C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR018C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YCR019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCR020C-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YCR021C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 20 mM boric acid for 1h
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCR023C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCR024C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR024C-A PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCR025C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR028C-A PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YCR030C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR032W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCR033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YCR035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR040W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YCR041W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YCR042C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCR043C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YCR044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCR046C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR050C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCR051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR052W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR053W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR054C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR057C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR065W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YCR066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCR069W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR071C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR072C PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR076C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCR083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCR084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR085W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR087W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR088W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR089W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YCR091W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR092C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCR093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YCR094W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YCR096C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCR097W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCR097W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCR099C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCR100C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCR101C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCR102C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCR104W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCR105W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YCR106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YCR107W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL248W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL247W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL246C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL245C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL244W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL243C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL242W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL241W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL240W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL239C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDL238C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL237W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL236W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL235C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL234C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL233W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL232W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDL231C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL230W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL229W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL228C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL227C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL226C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL225W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL224C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL223C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL222C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL221W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDL220C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL219W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YDL218W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL217C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL216C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDL215C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YDL214C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL213C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL212W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL211C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL210W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL209C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL208W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL207W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL206W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL205C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL204W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL203C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL202W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL201W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL200C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL199C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL198C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL197C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL196W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL195W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL194W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL193W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDL192W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL190C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL188C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL187C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL186W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL185W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL184C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL183C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDL181W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YDL180W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDL179W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL178W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL177C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL176W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL175C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL174C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL173W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL171C PubMed external link Valenzuela L et al., J Bacteriol, 1998 Jul;180(14):3533-40Valenzuela L et al., J Bacteriol, 1998 Jul;180(14):3533-40 Indirect lacZ - wt vs TF mutant Positive S288c ammonium sulfate as N source
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ishida C et al., Mol Microbiol, 2006 Mar;59(6):1790-806Ishida C et al., Mol Microbiol, 2006 Mar;59(6):1790-806 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YDL170W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Ishida C et al., Mol Microbiol, 2006 Mar;59(6):1790-806Ishida C et al., Mol Microbiol, 2006 Mar;59(6):1790-806 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect lacZ - wt vs TF mutant Positive EG328-1A PUGA3-lacZ reporter plasmid was introduced into wt cells or into cells deleted for GCN4 and GLN3. Cells were cultured in synthetic complete medium supplemented with all amino acids except histidine, treated with 3-AT or rapamycin(Rap) for 6h
Indirect lacZ - wt vs TF mutant Positive EG328-1A PUGA3-lacZ reporter plasmid was introduced into wt cells or into cells deleted for GCN4. Cells were cultured in synthetic complete medium supplemented with all amino acids except histidine, treated with 3-AT or rapamycin(Rap) for 6h
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YDL169C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL168W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL167C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL165W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL164C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YDL163W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL162C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL161W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL160C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL159W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDL159W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL158C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL157C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL156W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YDL155W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YDL154W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL153C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL152W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL151C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL150W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL149W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL148C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL147W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL146W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL145C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL142C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL141W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL140C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL139C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL138W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL137W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL136W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL135C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL134C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL133C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL133W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL132W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL130W-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL130W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL129W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL128W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL127W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL126C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL125C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL124W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL121C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL120W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL119C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL115C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL114W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDL113C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL111C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL110C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL109C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL107W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL106C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDL105W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL103C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL102W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL101C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL100C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL097C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL095W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YDL092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL090C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL089W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL085C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YDL085W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL084W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL079C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL078C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL077C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YDL076C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YDL072C PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL069C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
YDL067C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL066W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL064W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL062W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDL058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDL056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL055C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL054C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL051W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL050C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL048C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDL047W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDL046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL042C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL040C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDL033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL032W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL029W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL025C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL023C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL022W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL021W PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL019C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDL017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL016C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL015C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL012C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDL011C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDL010W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL009C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDL006W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDL005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDL004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDL003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR001C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YDR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR003W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YDR004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR007W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR008C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YDR010C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR011W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YDR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR019C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR020C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR021W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR024W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR029W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR030C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR034C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR034C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR034W-B PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR035W PubMed external link Paravicini G et al., Mol Cell Biol, 1989 Jan;9(1):144-51Paravicini G et al., Mol Cell Biol, 1989 Jan;9(1):144-51 Indirect Northern blot - wt vs TF mutant Positive S288c Amino acid starvation
PubMed external link Künzler M et al., Mol Microbiol, 1995 Jan;15(1):167-78Künzler M et al., Mol Microbiol, 1995 Jan;15(1):167-78 Indirect Northern blot - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR037W PubMed external link Lanker S et al., Cell, 1992 Aug 21;70(4):647-57Lanker S et al., Cell, 1992 Aug 21;70(4):647-57 Indirect Northern blot - wt vs TF mutant Positive T80 Minimal medium + excess lys/arg
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YDR038C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR039C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR040C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
YDR041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR042C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR043C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR044W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR045C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR046C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR047W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR049W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR050C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR062W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR064W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR065W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR066C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR069C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR070C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR071C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR072C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR074W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR076W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR077W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR078C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR079W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR079C-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YDR080W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDR081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR084C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR085C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR086C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR089W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YDR090C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR091C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR092W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR094W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR097C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR101C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR106W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDR107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR109C PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YDR110W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR111C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR112W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR113C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR114C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR115W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR116C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR117C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR118W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR119W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR120C PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YDR121W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR122W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR123C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR124W PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR125C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR126W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YDR127W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YDR128W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR130C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR132C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR133C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR134C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR135C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR136C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR137W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR138W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR141C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR142C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YDR143C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR145W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR146C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR147W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR148C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR149C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR150W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR151C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR152W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR153C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR154C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR155C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR156W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR157W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR158W PubMed external link Mountain HA et al., Yeast, 1991 Nov;7(8):781-803Mountain HA et al., Yeast, 1991 Nov;7(8):781-803 Indirect Northern blot - wt vs TF mutant Positive S288C Minimal medium + methionine
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR159W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR160W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR161W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR162C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR163W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR164C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR165W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR167W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR168W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR169C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR170C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR171W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR173C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YDR174W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR175C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR176W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR177W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR178W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR179C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR179W-A PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR180W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR181C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR182W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR183W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR184C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR185C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR186C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR187C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR188W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR190C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR191W PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR192C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR193W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR194C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR195W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
YDR196C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR197W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR198C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR199W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR200C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR201W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR202C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR204W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR205W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR206W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR207C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR208W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR210W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR211W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR212W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR213W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR214W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR216W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR217C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR218C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR219C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR221W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR222W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR223W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR224C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR225W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR226W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR227W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR228C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR229W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR230W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR231C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR232W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR233C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR234W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR235W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR236C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR237W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR238C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR239C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR240C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR241W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YDR242W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR243C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR244W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR245W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR246W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR247W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR248C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR249C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR250C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR251W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR252W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR253C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR254W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR255C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR256C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR257C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR258C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR259C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR260C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR261C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR262W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR263C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR264C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR265W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR266C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR267C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR268W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR270W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR272W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR273W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR274C PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR275W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR276C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR277C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR278C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR279W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR280W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR281C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR282C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 20 mM boric acid for 1h
YDR283C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR284C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR285W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR286C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR288W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR289C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR290W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR291W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR292C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR293C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR294C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR295C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR296W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR297W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR298C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR299W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR300C PubMed external link Li W et al., J Bacteriol, 1992 Jun;174(12):4148-56Li W et al., J Bacteriol, 1992 Jun;174(12):4148-56 Indirect Northern blot - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR301W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR302W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR303C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR304C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR305C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR306C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR307W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR309C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR310C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR311W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR312W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR313C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR314C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR315C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR316W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR317W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR318W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR319C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR320C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR320C-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR321W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR322W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR322C-A PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR323C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR324C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR325W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR326C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR328C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR329C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR330W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR331W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR332W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR333C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR334W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR335W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR336W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR337W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR338C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR339C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR340W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR341C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR342C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR343C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR344C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR345C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR346C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR347W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR348C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR349C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR350C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR351W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR352W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR353W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR354W PubMed external link Mösch HU et al., EMBO J, 1990 Sep;9(9):2951-7Mösch HU et al., EMBO J, 1990 Sep;9(9):2951-7 Indirect Northern blot - wt vs TF mutant Positive S288c Minimal medium; mid-log phase
PubMed external link Braus G et al., EMBO J, 1989 Mar;8(3):939-45Braus G et al., EMBO J, 1989 Mar;8(3):939-45 Direct DNA footprinting N/A S288c in vitro
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR355C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YDR356W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR357C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR358W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR359C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR360W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR361C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR362C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR363W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR363W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR364C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR365C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR366C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR367W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR368W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR369C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR370C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR371W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR372C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR373W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR374C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR375C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR376W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR377W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR378C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR379W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR379C-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR380W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDR381W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR382W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR383C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR384C PubMed external link Guaragnella N et al., J Biol Chem, 2003 Nov 14;278(46):45882-7Guaragnella N et al., J Biol Chem, 2003 Nov 14;278(46):45882-7 Indirect Northern blot - wt vs TF mutant Positive S288c mid-log phase on YNBRcas medium
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR385W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR386W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR387C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR388W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YDR389W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR390C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR391C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR392W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR393W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR394W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR395W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR397C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR398W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR399W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR400W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR402C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR403W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR404C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR405W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR406W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR407C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR408C PubMed external link Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111 Indirect Northern blot - wt vs TF overexpression Negative S288c 50ug/ml 8-azaadenine (purine starvation)
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR409W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR410C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR411C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR412W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR413C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YDR414C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR415C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR416W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR417C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR418W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR419W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR420W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR421W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR422C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR423C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR424C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR425W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDR426C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR427W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR428C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR429C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR430C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR431W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR432W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YDR434W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR435C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR436W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR437W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR438W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR439W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR440W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR441C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR443C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR444W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR445C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR446W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR447C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR448W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR449C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR450W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR451C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YDR452W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR453C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR454C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR455C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR456W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR457W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR458C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR459C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR460W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR461W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR462W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR463W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR464W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR465C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR466W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR467C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR468C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YDR469W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR470C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR471W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR472W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR473C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR475C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR476C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDR477W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR478W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR479C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR480W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR481C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR482C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR483W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR484W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR485C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR486C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR487C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR488C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR489W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR490C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR491C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
YDR492W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR493W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR494W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR495C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR496C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR497C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR498C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR499W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR500C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR501W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR502C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR503C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR504C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YDR505C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR506C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR507C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR508C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YDR509W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
YDR510W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YDR511W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR512C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR513W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR514C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR515W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR516C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR517W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR518W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR519W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR520C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR521W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR522C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR523C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR524C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR525W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR525W-A PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR526C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR527W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR528W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YDR529C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YDR530C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR531W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR532C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR533C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDR534C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR535C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YDR536W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YDR537C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR538W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR539W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR540C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YDR541C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YDR542W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YDR543C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YEL077C PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YEL075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL074W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YEL073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YEL071W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YEL070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL069C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL065W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YEL064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL063C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YEL062W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YEL061C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL060C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YEL059W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YEL058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL057C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YEL056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL051W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL050C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YEL048C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL046C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Tsoi BM et al., J Biol Chem, 2009 Apr 24;284(17):11205-15Tsoi BM et al., J Biol Chem, 2009 Apr 24;284(17):11205-15 Indirect lacZ - wt vs TF mutant Positive BY4743 SDC medium
Indirect lacZ - wt vs TF mutant Positive BY4743 SDC medium supplemented with L-serine
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YEL045C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL044W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YEL043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL039C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YEL038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YEL035C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL034W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YEL033W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YEL032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YEL030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL029C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL026W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YEL023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YEL022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL020W-A PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YEL020C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YEL019C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL017C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YEL017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL014C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YEL013W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YEL012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL011W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL010W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YEL009C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YEL008W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YEL007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YEL006W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YEL005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YEL004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YEL003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YEL002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YEL001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER001W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
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YER008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YER010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YER012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
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PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YER017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER019C-A PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER020W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YER023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER024W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER035W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YER036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Yadav KK et al., Curr Genet, 2016 Nov;62(4):841-851Yadav KK et al., Curr Genet, 2016 Nov;62(4):841-851 Direct EMSA Negative S288c Grown in YEPD or SD medium with YNB containing 2% glucose and kanamycin (50microg/mL)
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YER039C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER039C-A PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YER040W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER044C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YER044C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER048C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER052C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YER053C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YER055C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YER056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER056C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YER060W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YER061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER062C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER064C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER065C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER067W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YER068W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
YER069W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids
Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YER070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER072W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
YER073W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YER074W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER074W-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YER075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER076C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER078C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER080W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER081W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids
Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER082C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER084W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER085C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER086W PubMed external link Arndt K et al., Proc Natl Acad Sci U S A, 1986;():Arndt K et al., Proc Natl Acad Sci U S A, 1986;(): Direct DNA footprinting N/A S288c in vitro
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER087W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER087C-B PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YER088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER089C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER090W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Ott C et al., Mol Cell Biol, 2012 Mar;32(6):1173-88Ott C et al., Mol Cell Biol, 2012 Mar;32(6):1173-88 Direct ChIP N/A S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER091C PubMed external link Mountain HA et al., Yeast, 1991 Nov;7(8):781-803Mountain HA et al., Yeast, 1991 Nov;7(8):781-803 Indirect Northern blot - wt vs TF mutant Positive S288C Minimal medium + methionine
PubMed external link Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69 Indirect Northern blot - wt vs TF mutant Negative S288c Minimal B medium upon glycine removal
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids
Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER091C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER093C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER093C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YER094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER095W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YER096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER099C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER101C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER102W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER103W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER104W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER109C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YER110C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER111C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YER112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER113C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YER114C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER115C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER116C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YER117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER118C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YER119C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YER120W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER121W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER122C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YER123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER124C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YER125W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YER126C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER127W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER128W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER129W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER130C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 20 mM boric acid for 1h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER131W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER132C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER133W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER134C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER135C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YER136W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YER137C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER138W-A PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
YER139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER141W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER142C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER145C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534 Indirect RT-PCR - wt vs TF mutant Positive RS-86 Cells cultured to mid-exponential phase in SD medium
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER146W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER147C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER148W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER149C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER150W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER152C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YER153C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER154W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER155C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER157W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER158C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER159C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER161C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
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YER164W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER166W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
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PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER168C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER169W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER170W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER171W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YER172C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER173W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER174C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YER175C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Dumlao DS et al., Biochemistry, 2008 Jan 15;47(2):698-709Dumlao DS et al., Biochemistry, 2008 Jan 15;47(2):698-709 Indirect Enzyme activity - wt vs TF mutant Positive S288c amino acid starvation (leucine limitation)
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER176W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YER177W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER178W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Proteomics - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YER179W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER180C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER181C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YER182W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER183C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER184C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YER185W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER186C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YER187W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER188W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YFL068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YFL067W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL063W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL062W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL060C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL059W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFL058W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL057C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YFL056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFL054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL053W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL048C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFL047W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFL046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFL045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL042C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFL041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YFL039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFL038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YFL036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL034C-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YFL032W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Herzog B et al., Eukaryot Cell, 2013 Aug;12(8):1142-54Herzog B et al., Eukaryot Cell, 2013 Aug;12(8):1142-54 Indirect RT-PCR - wt vs TF mutant Positive S288c ER stress (tunycamycin inhibition)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YFL030W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFL028C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFL026W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFL025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFL024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFL022C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL021W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YFL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFL018C PubMed external link Zaman Z et al., Biochem J, 1999;():Zaman Z et al., Biochem J, 1999;(): Direct EMSA N/A S288c in vitro
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFL017W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFL017C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL016C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL014W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Gutin J et al., Mol Syst Biol, 2015 Oct 7;11(10):829Gutin J et al., Mol Syst Biol, 2015 Oct 7;11(10):829 Indirect GFP - wt vs TF mutant Positive S288c diauxic shift
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFL013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YFL011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFL010W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YFL010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFL009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFL008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFL007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFL005W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFL004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YFL003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YFL002C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFR005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFR006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YFR007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFR009W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YFR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFR012W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YFR013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR015C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR017C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFR018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YFR019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFR023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFR024C-A PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFR025C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFR027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YFR028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR029W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR030W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFR031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR031C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFR032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFR032C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFR033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFR034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFR035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFR037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YFR043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YFR045W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YFR047C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFR048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YFR049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YFR050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFR051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YFR052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFR053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFR054C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YFR056C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YFR055W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YFR057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL263W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL262W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL260W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL259W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL258W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL258W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YGL257C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL256W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL255W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL254W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL253W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL252C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL251C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL250W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL249W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL248W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL247W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL246C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL244W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL243W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL242C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL241W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL240W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL239C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL238W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL237C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGL236C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL235W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL234W PubMed external link Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL233W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL232W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL231C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL230C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL229C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL228W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YGL227W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL226W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL225W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL224C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL223C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL222C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YGL221C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL220W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL219C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL218W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL217C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL216W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL215W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YGL214W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL213C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL212W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YGL211W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL210W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL209W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL208W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL207W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL206C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGL205W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL203C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGL202W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL201C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL200C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YGL198W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL197W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL196W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL195W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL194C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL192W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL190C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL189C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL188C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL187C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL186C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL185C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL184C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Herbig E et al., Mol Cell Biol, 2010 May;30(10):2376-90Herbig E et al., Mol Cell Biol, 2010 May;30(10):2376-90 Indirect RT-PCR - wt vs TF mutant Positive S288c sulfometuron methyl
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YGL183C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YGL182C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL181W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL180W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122 Indirect RT-PCR - wt vs TF mutant Positive S288c Nitrogen starvation
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL179C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL178W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL176C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL175C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL174W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL173C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL171W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL170C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL169W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL168W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL167C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL166W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL164C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL163C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL162W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL161C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL160W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL159W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL158W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL157W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL156W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL155W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL154C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL153W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL152C PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL151W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL150C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL148W PubMed external link Jones DG et al., Mol Microbiol, 1991 Sep;5(9):2143-52Jones DG et al., Mol Microbiol, 1991 Sep;5(9):2143-52 Direct DNA footprinting N/A S288c N/A
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL147C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL146C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL145W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL143C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL142C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL141W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL140C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL139W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL137W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL136C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL135W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL133W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL132W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL130W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL128C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL127C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL126W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YGL125W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YGL124C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL122C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL121C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL120C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL119W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL118C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL117W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YGL115W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL114W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL112C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL111W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL110C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL108C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL102C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL101W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGL100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL098W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL097W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL089C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YGL088W PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL081W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL080W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL078C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL076C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YGL074C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL071W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL070C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL067W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL062W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL060W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
YGL059W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL054C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL053W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YGL052W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL050W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL048C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL047W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL044C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL042C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL040C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL037C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL034C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YGL033W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL031C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL029W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL026C PubMed external link Kinney DM et al., Mol Cell Biol, 1989 Nov;9(11):4882-8Kinney DM et al., Mol Cell Biol, 1989 Nov;9(11):4882-8 Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -arginine starvation
Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -tryptophan starvation
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL024W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL015C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YGL014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGL010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL009C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGL008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGL006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL005C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGL004C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGL001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR009C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR011W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR013W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR015C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR018C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect lacZ - wt vs TF mutant Negative EG328-1A yeast cells deleted for GCN4 and GLN3 were transformed with a plasmid encoding a lacZ reporter gene fused to the UGA1 promoter. Cells were cultured in synthetic medium containing ammonia as the nitrogen source and then switched to synthetic medium containing 10 mM GABA as the nitrogen source for 6 h
Indirect lacZ - wt vs TF mutant Negative EG328-1A yeast cells deleted for GCN4 were transformed with a plasmid encoding a lacZ reporter gene fused to the UGA1 promoter. Cells were cultured in synthetic medium containing ammonia as the nitrogen source and then switched to synthetic medium containing 10 mM GABA as the nitrogen source for 6 h
YGR020C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR022C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YGR023W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR026W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR029W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR030C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR033C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR038W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR039W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YGR042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR043C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR050C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR051C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR055W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR061C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YGR065C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR066C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR067C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR069W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
YGR070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR074W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR076C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR078C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR079W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR080W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR085C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR086C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YGR088W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR089W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR091W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR094W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR095C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR097W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR101W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR102C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR103W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR105W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YGR106C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR109C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR110W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR111W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR115C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YGR116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR117C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR118W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR119C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR120C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR121C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR122W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR122C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR123C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR124W PubMed external link Dang VD et al., Mol Microbiol, 1996 Nov;22(4):681-92Dang VD et al., Mol Microbiol, 1996 Nov;22(4):681-92 Indirect lacZ - wt vs TF mutant Positive S288c Minimal medium; mid-log phase
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR125W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YGR126W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR127W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR128C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR129W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR130C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR131W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR132C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR133W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR135W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR136W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YGR137W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR139W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR141W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR142W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YGR144W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR145W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR146C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR147C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR148C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR149W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR150C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR151C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YGR152C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YGR153W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YGR154C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR155W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR156W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR157W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR158C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR159C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR160W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR161C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR162W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR163W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR164W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR165W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR166W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR167W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR168C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YGR169C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR170W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR171C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR172C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR173W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR174C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR175C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR176W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR177C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR178C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR179C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR180C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR181W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR182C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR183C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR184C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR185C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR186W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR187C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR188C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR189C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR190C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR192C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR193C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR194C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR195W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR196C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR197C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR198W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR199W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR200C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR201C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR202C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR203W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR204W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Joo YJ et al., Eukaryot Cell, 2009 Aug;8(8):1268-77Joo YJ et al., Eukaryot Cell, 2009 Aug;8(8):1268-77 Indirect Northern blot - wt vs TF mutant Positive S288c SC medium w/o histidine
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR205W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YGR206W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YGR207C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR208W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR209C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR210C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YGR211W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YGR212W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR213C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR214W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR215W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR216C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR217W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR218W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YGR219W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR220C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YGR221C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR222W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR223C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR224W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR225W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR226C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR227W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR228W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR229C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR230W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR231C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR232W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR233C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR234W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR235C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR236C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR237C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR238C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR239C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR240C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR241C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR243W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR244C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR245C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR246C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR247W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR248W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR249W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YGR250C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR251W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR252W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR253C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR254W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Proteomics - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR255C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR256W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR257C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR258C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR260W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR261C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR262C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR263C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR264C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR265W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR266W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR267C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR268C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR269W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
YGR270W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR271W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR271C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR272C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR273C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR274C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR275W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR276C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR277C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR278W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGR279C PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR280C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR281W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect RT-PCR - wt vs TF mutant Negative S288c minimal SDmedia
Indirect RT-PCR - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YGR282C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YGR283C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR284C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR285C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Northern blot - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YGR286C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR287C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YGR288W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YGR289C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR293C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YGR295C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YGR296W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHL050C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHL048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHL047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534 Indirect RT-PCR - wt vs TF mutant Negative RS-86 Cells cultured to mid-exponential phase in SD medium
YHL045W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHL044W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL041W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHL040C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534 Indirect RT-PCR - wt vs TF mutant Negative RS-86 Cells cultured to mid-exponential phase in SD medium
YHL039W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YHL036W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHL035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Wawrzycka D et al., FEMS Yeast Res, 2010 Nov;10(7):828-38Wawrzycka D et al., FEMS Yeast Res, 2010 Nov;10(7):828-38 Indirect lacZ - wt vs TF mutant Negative S288c SD medium +CdCl2
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHL034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHL033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHL032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHL029C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL028W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHL027W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHL026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHL025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHL023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YHL021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL019C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHL015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHL014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHL013C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHL010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL009C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHL007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHL006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHL005C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YHL004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHL003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHL002W PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR001W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YHR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR003C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR004C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YHR005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR005C-A PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YHR006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR009C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR016C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YHR017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR018C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Kim SJ et al., Mol Cell Biol, 2005 Dec;25(24):11171-83Kim SJ et al., Mol Cell Biol, 2005 Dec;25(24):11171-83 Direct ChIP N/A S288c exposure to sulfometuron methyl
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Lee JC et al., FEMS Yeast Res, 2013 Nov;13(7):618-34Lee JC et al., FEMS Yeast Res, 2013 Nov;13(7):618-34 Indirect Northern blot - wt vs TF mutant Positive S288c Cells grown to mid-exponential phase in SD min; addition of 100 mM L-serine
PubMed external link Qiu H et al., Genome Res, 2016 Feb;26(2):211-25Qiu H et al., Genome Res, 2016 Feb;26(2):211-25 Direct ChIP N/A S288c Cells grown in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600 = 0.6–0.8), and SM was added at 1 microg/mL for 30 min to induce Gcn4. 
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YHR019C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR020W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR021W-A PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR022C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR023W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR024C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR025W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR026W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR029C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR030C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR031C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR034C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR035W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR041C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR049W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YHR050W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR051W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR053C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YHR054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR055C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YHR056C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
YHR057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR061C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YHR062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR065C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR066W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR067W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR069C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR070W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YHR071W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YHR072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR072W-A PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR074W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR076W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR079C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR079C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR081W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR082C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YHR083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR084W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR087W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR088W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR089C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR090C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR092C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YHR094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR095W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR096C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR097C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR099W PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR100C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YHR101C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR102W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR104W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR105W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR109W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR110W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YHR111W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR112C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR114W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR115C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR118C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR119W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR120W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR121W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YHR122W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR124W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR125W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR126C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR127W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR128W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR130C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR132C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR132W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR133C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR135C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR136C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR137W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR138C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR139C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YHR141C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR142W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YHR143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YHR143W-A PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR145C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR146W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR147C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR148W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR149C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR150W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YHR151C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR152W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR153C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR154W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR155W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YHR156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR157W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR158C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR159W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR160C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR161C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YHR162W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YHR163W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR164C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR165C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR167W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR168W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR169W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR170W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR171W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR173C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR174W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR175W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR176W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR177W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR178W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR179W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YHR180W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YHR181W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR182W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR183W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR184W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR185C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YHR186C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR187W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR188C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR190W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR191C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR192W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR193C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR194W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR195W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YHR196W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR197W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR198C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR199C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR200W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR201C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR202W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YHR203C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR204W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR205W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YHR206W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YHR207C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YHR208W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link González J et al., Genetics, 2017 Nov;207(3):975-991González J et al., Genetics, 2017 Nov;207(3):975-991 Direct ChIP N/A CLA11-700 MM medium with 2% glucose with valine (150 mg/liter), isoleucine (30 mg/liter) and leucine (100 mg/liter)
Direct ChIP N/A CLA11-700 Cells grown to OD600 0.5 on MM with 2% glucose with Glutamine (biosynthetic conditions)
Direct ChIP N/A CLA11-700 Cells grown to OD600 0.5 on MM with 2% glucose with GABA
Indirect Northern blot - wt vs TF mutant Positive CLA11-700 MM medium with 2% glucose with glutamine (7 mM)
Indirect Northern blot - wt vs TF mutant Positive CLA11-700 Cells grown to OD600 0.5 on MM with 2% glucose with Glutamine (biosynthetic conditions)
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR209W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR210C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR211W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR213W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR214W-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR215W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR216W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHR217C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL177C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL176C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL175W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL173W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YIL172C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL169C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL168W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL165C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL164C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL163C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL162W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YIL161W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL160C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL159W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL158W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YIL157C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL156W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL155C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL153W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL152W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YIL151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL150C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL149C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL148W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL147C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL146C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL145C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL144W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL143C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL142W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YIL139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL137C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL136W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL135C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL133C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL132C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL130W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL128W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL127C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL126W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL125W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL124W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YIL122W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL121W PubMed external link Vargas RC et al., Eukaryot Cell, 2007 Feb;6(2):134-42Vargas RC et al., Eukaryot Cell, 2007 Feb;6(2):134-42 Indirect Northern blot - wt vs TF mutant Positive S288c leucine limitation
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL120W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL119C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL118W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL117C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL116W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Yao Z et al., Autophagy, 2015;11(12):2288-99Yao Z et al., Autophagy, 2015;11(12):2288-99 Direct ChIP N/A S288c Cells were cultured in YPD to mid-log phase and then shifted to SD-N for autophagy induction. 
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL115C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL114C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL111W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL110W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL109C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YIL104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL102C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL101C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL098C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL097W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL096C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL095W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL094C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL093C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL092W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL091C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL089W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL087C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL086C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL085C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL079C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL077C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL076W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL074C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL070C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL069C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL067C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL066C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL064W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL059C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL057C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YIL056W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YIL055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL054W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL053W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL050W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL042C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YIL030C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL028W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL025C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIL023C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL015W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL014C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YIL014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YIL012W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIL010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL009C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL009W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIL008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIL005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL004C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL003W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIL002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIR001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIR002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIR003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIR004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIR005W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIR006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YIR007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIR008C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIR009W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIR010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIR013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIR014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIR015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIR016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIR017C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIR018W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YIR019C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Herzog B et al., J Mol Biol, 2011 Jan 28;405(4):909-25Herzog B et al., J Mol Biol, 2011 Jan 28;405(4):909-25 Indirect lacZ - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Herzog B et al., Eukaryot Cell, 2013 Aug;12(8):1142-54Herzog B et al., Eukaryot Cell, 2013 Aug;12(8):1142-54 Indirect lacZ - wt vs TF mutant Positive S288c aminoacid starvation (3-amino-1,2,4-triazole)
PubMed external link Wang LC et al., Biomed Res Int, 2015;():Wang LC et al., Biomed Res Int, 2015;(): Direct ChIP Positive S288c Cells haploids and diploids; Amino acid starvation condition induced by 3-amino-1,2,4-triazole (3AT)
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIR020C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YIR021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIR022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIR023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIR024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIR025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YIR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIR027C PubMed external link Valenzuela L et al., J Bacteriol, 2001 Apr;183(7):2331-4Valenzuela L et al., J Bacteriol, 2001 Apr;183(7):2331-4 Indirect Northern blot - wt vs TF mutant Positive S288c Rapamycin treatment
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64 Direct ChIP N/A S288c 3-aminotriazole
YIR028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YIR029W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YIR030C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YIR031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIR032C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YIR033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIR034C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIR035C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIR037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIR038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIR039C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YIR041W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YIR042C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YIR043C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL223C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YJL222W PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL220W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YJL219W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL218W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL217W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL216C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL214W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL213W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL212C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJL210W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL209W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL208C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL207C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL206C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL205C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL204C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL203W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL202C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL201W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL200C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YJL199C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL198W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL197W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL196C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJL195C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJL194W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJL193W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL190C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL188C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL187C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YJL186W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL185C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL184W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJL183W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJL182C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL181W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL180C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL179W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJL178C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL177W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL176C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL175W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJL174W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL173C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YJL171C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL170C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL169W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL168C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL167W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL166W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJL165C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL164C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YJL163C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL162C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL161W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL160C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YJL159W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJL158C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJL157C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL155C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL154C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL153C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL152W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL149W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL148W PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL147C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL146W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL145W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL144W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL142C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL141C PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJL140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJL139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL137C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL136C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL135W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL133W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJL132W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL130C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YJL129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL128C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL127C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL126W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL125C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL124C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL123C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL122W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL121C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL120W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL118W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YJL117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL116C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL115W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL111W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL110C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL109C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL108C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJL107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL105W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL104W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL103C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL102W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL101C PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJL099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL098W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL097W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL095W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL028W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJL027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL026W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL025W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJL015C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL012C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL011C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL009W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
YJL008C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL007C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL004C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR003C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR004C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJR005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJR007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YJR008W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR009C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR010W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69 Indirect Northern blot - wt vs TF mutant Positive S288c Minimal B medium upon glycine removal
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR012C PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJR013W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR016C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR018W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
YJR019C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJR023C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR025C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR030C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJR031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR034W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR035W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YJR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR038C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJR041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR044C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YJR047C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR048W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR050W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YJR051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJR053W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YJR054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YJR061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR064W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR069C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR070C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR071W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR072C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR073C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR074W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR076C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YJR077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJR080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR082C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR084W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR085C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR087W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR089W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR090C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR093C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR094W-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR095W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR096W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR097W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR098C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR100C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR101W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR102C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR104C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR105W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR107W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 20 mM boric acid for 1h
YJR109C PubMed external link Kinney DM et al., Mol Cell Biol, 1989 Nov;9(11):4882-8Kinney DM et al., Mol Cell Biol, 1989 Nov;9(11):4882-8 Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -arginine starvation
Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -histidine starvation
Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -tryptophan starvation
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Miles WO et al., Genes Dev, 2012 Feb 15;26(4):356-68Miles WO et al., Genes Dev, 2012 Feb 15;26(4):356-68 Direct ChIP N/A S288c aa starvation (Ile and Val)
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Qiu H et al., Genome Res, 2016 Feb;26(2):211-25Qiu H et al., Genome Res, 2016 Feb;26(2):211-25 Direct ChIP N/A S288c Cells grown in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600 = 0.6–0.8), and SM was added at 1 microg/mL for 30 min to induce Gcn4. 
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YJR110W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YJR111C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR112W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR113C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR114W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR115W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJR116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJR117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR118C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR119C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR120W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR121W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR122W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR124C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR125C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR126C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR127C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR128W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YJR129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR130C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR131W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR132W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR133W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJR135C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR135W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YJR136C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR137C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR138W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR141W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR142W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJR143C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR144W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR145C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR146W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR147W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJR148W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR149W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJR150C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJR151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR152W PubMed external link Valenzuela L et al., J Bacteriol, 2001 Apr;183(7):2331-4Valenzuela L et al., J Bacteriol, 2001 Apr;183(7):2331-4 Indirect Northern blot - wt vs TF mutant Positive S288c Rapamycin treatment
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64 Direct ChIP N/A S288c 3-aminotriazole
YJR153W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJR154W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR155W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR157W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR161C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJR162C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL225W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL223W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL222C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL221W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL220C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL219W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL218C PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL217W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL216W PubMed external link Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69 Indirect Northern blot - wt vs TF mutant Negative S288c Minimal B medium upon glycine removal
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL215C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL214C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL213C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL212W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL211C PubMed external link Martens JA et al., J Biol Chem, 1994 Jun 3;269(22):15661-7Martens JA et al., J Biol Chem, 1994 Jun 3;269(22):15661-7 Indirect Primer extension - wt vs mutant promoter sequence Positive S288c growth in minimal medium containing 3-amino-1,2,4-triazole (AT) to induce GCN4 expression
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kim SJ et al., Mol Cell Biol, 2005 Dec;25(24):11171-83Kim SJ et al., Mol Cell Biol, 2005 Dec;25(24):11171-83 Indirect Northern blot - wt vs TF mutant Positive S288c exposure to sulfometuron methyl
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Joo YJ et al., Eukaryot Cell, 2009 Aug;8(8):1268-77Joo YJ et al., Eukaryot Cell, 2009 Aug;8(8):1268-77 Indirect Northern blot - wt vs TF mutant Positive S288c SC medium w/o histidine
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL210W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL209C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL208W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL207W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL206C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL205W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL204W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL203C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL202W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL201C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL197C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL196C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL195W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL194C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL193C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YKL192C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL190W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL188C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL187C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL186C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL185W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL184W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL183W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL182W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL181W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL180W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL179C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL178C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YKL177W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YKL176C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL175W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL174C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL173W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL171W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL170W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL169C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL168C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL167C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL165C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL164C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL163W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL162C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL162C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL161C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL160W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL159C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL157W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL156W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL155C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL154W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL153W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL152C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL150W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL149C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL148C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect RT-PCR - wt vs TF mutant Negative S288c minimal SDmedia
Indirect RT-PCR - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL146W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL145W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL142W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL141W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL139W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL138C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL137W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL135C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL134C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL133C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL132C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YKL130C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL128C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL127W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL126W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL125W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL124W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL123W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL122C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL121W PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL120W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL119C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL116C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL115C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL114C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL113C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL111C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL110C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL109W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL107W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL106W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL103C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL102C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL101W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL100C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL099C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL098W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL097C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YKL096W-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL095W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL094W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL092C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL089W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YKL088W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL086W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL084W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL083W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL082C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL081W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL080W PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL077W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL076C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL072W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL071W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL069W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YKL067W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL066W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL064W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL062W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL060C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YKL057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YKL053C-A PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL051W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL048C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL047W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL043W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YKL042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YKL040C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL036C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL035W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL033W-A PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL031W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL030W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL029C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKL025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKL023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL019W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL016C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YKL015W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YKL014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL010C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL008C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL006C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKL005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKL003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKL002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKL001C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YKR001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKR003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR004C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YKR005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR009C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKR011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKR012C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKR013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKR014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR015C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YKR018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKR019C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR020W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKR024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKR025W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKR031C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR032W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKR034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YKR035W-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YKR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YKR037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR039W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR043C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR044W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR047W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKR048C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YKR050W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR052C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR053C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKR054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR056W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR057W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR058W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR059W PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR060W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKR062W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR064W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YKR065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YKR066C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR067W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR069W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR072C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR074W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YKR075C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR076W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR077W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKR078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKR079C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR080W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
YKR081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR085C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YKR089C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YKR091W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YKR092C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR095W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR097W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YKR098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR099W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR100C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR101W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YKR102W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YKR106W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL067C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YLL065W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLL063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLL062C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL060C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL059C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL055W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLL054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLL053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL052C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLL051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLL048C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLL046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL042C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL040C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL037W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLL036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YLL035W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLL032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLL029W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLL028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Godinho CP et al., Appl Microbiol Biotechnol, 2017 Jun;101(12):5005-5018Godinho CP et al., Appl Microbiol Biotechnol, 2017 Jun;101(12):5005-5018 Indirect RT-PCR - wt vs TF mutant Positive BY4741 Cells grown on MM4 medium at pH 4.0 supplemented with benzoic acid (0.9 mM)
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YLL027W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YLL026W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YLL024C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL023C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLL022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL020C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
YLL019C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLL018C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLL013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLL012W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLL010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLL009C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL008W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLL007C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLL006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL005C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YLL004W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL003W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YLR002C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR003C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR004C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YLR007W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR008C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR012C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YLR014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR027C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YLR028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR032W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YLR038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR040C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR041W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YLR042C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR044C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR047C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR048W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR049C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR050C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR062C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR064W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YLR065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR069C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR070C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR076C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR077W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR078C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR080W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR081W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR082C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR085C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR088W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR089C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YLR091W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR092W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids
Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR093C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR097C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR099C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR101C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR102C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR103C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR104W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR106C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR107W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR108C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR109W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR110C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR112W PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR114C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR115W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YLR117C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR118C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR119W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR120C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR121C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR122C PubMed external link Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69 Indirect Northern blot - wt vs TF mutant Positive S288c Minimal B medium upon glycine removal
YLR125W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR126C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR127C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR128W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR129W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR130C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR132C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR133W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR135W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR136C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YLR137W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR141W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR142W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YLR143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR144C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR145W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR146C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR147C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR148W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR149C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR149C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR150W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YLR152C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR153C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR154C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR155C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YLR156W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YLR162W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YLR163C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR164W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR165C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR167W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR168C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR169W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR170C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR172C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR173W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR174W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR175W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR176C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR177W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR178C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR179C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR180W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR181C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR182W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR183C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR184W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR185W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR186W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR187W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR188W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR189C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR190W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR192C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR193C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR194C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR195C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR196W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR197W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR198C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR199C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR200W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR201C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR202C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR203C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR204W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR205C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR206W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR207W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR208W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR209C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR210W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR211C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR212C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR213C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR214W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect RT-PCR - wt vs TF mutant Negative S288c minimal SDmedia
Indirect RT-PCR - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR215C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR216C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR217W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR218C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR219W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR220W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR221C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR222C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR223C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Indirect Western blot - wt vs TF mutant Negative S288c 3-aminotriazole
YLR224W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR225C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR226W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR227C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR228C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR229C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR231C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR232W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YLR233C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR234W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR236C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR237W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR238W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR239C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR240W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR242C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR243W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR244C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR245C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR246W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR247C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR248W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR249W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR250W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR251W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR252W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR253W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR254C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR255C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR256W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR257W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YLR258W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR259C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR260W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YLR261C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR262C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR262C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR263W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR264W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR265C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR266C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YLR267W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR269C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR270W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YLR271W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR272C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR273C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR274W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR275W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR276C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR277C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR278C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR280C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR281C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR283W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR284C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR285W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR286C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR287C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR287C-A PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR288C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR289W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR290C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR292C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR293C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR294C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR295C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR297W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR298C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR299W PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR300W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR301W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR302C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR303W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR304C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Proteomics - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR305C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR306W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR307W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR308W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR309C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR310C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR311C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR312C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR312W-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR313C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR314C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR315W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR316C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR317W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YLR318W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR319C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR320W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR321C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR322W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR323C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR324W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR325C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR326W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR327C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR328W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR329W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR330W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR332W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR333C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR334C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR335W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR336C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR337C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR338W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR339C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR340W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR341W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR342W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR343W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR344W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR345W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR346C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR347C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR348C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR349W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR350W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR351C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR353W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR354C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR355C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Negative W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium containing amino acids with 500 microM of auxin
Indirect RT-PCR - wt vs TF mutant Negative W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YLR356W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR357W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR358C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YLR359W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR360W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR361C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR362W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR363C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR364W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR366W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR367W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR368W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR369W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR370C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR371W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR372W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YLR373C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR375W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR376C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR377C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR378C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR380W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR381W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR382C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR383W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR384C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR385C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YLR386W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR387C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR388W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR389C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR392C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR393W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR394W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR395C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YLR396C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR397C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR398C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YLR399C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR400W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR401C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR403W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Indirect Western blot - wt vs TF mutant Positive S288c 3-aminotriazole
YLR404W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR405W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR406C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR407W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR408C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR409C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR410W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR411W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR412W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR413W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YLR414C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR415C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR417W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YLR418C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR419W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR420W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR421C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR422W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR423C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR424W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR425W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR426W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR427W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR429W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR430W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR431C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR432W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR433C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR435W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR436C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR437C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YLR438W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR439W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR440C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR441C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR442C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR443W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR444C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR445W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR446W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR447C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR448W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR449W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR450W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR451W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR452C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR453C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR454W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR455W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YLR456W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR457C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR459W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YLR460C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR461W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLR462W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR464W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR466W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR467W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML133C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YML132W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML131W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML130C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML128C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML127W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML126C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML125C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML124C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML123C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML121W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML120C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML119W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML118W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML116W PubMed external link Coleman ST et al., J Biol Chem, 1997 Sep 12;272(37):23224-30Coleman ST et al., J Biol Chem, 1997 Sep 12;272(37):23224-30 Indirect lacZ - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Pascual-Ahuir A et al., Mol Cell Biol, 2001 Jan;21(1):16-25Pascual-Ahuir A et al., Mol Cell Biol, 2001 Jan;21(1):16-25 Indirect Northern blot - wt vs TF mutant Positive S288c Osmotic stress
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect RT-PCR - wt vs TF mutant Positive BY4741 50 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML115C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML114C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YML111W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML110C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML109W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML108W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YML105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML103C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML102W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML101C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YML100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML099C PubMed external link Messenguy F et al., Mol Cell Biol, 1993 Apr;13(4):2586-92Messenguy F et al., Mol Cell Biol, 1993 Apr;13(4):2586-92 Indirect Enzyme activity - wt vs TF mutant Positive 8534-8c Minimal medium
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML098W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML097C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YML095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML094W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML092C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YML091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML090W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML089C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML088W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML087C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML086C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML085C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML084W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YML082W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YML081C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YML081W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML080W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML079W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YML078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML077W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML076C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML072C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YML069W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML067C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML066C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML065W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YML059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YML058W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YML052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML050W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YML047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML046W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML043C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML029W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YML027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML024W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML020W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YML019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YML016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML015C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YML009C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YML008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML007W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YML004C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YML003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YML001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YMR007W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR008C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YMR010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YMR011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YMR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR015C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR019W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR020W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR031W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YMR032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR035W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR042W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR044W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR052C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YMR054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR057C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR060C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR062C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YMR063W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR064W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR065W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR066W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YMR067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR069W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR075C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR076C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR078C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YMR080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 20 mM boric acid for 1h
YMR083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR084W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YMR086C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR087W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YMR089C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR092C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR094W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR095C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR096W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Nishizawa M et al., Eukaryot Cell, 2008 Jun;7(6):949-57Nishizawa M et al., Eukaryot Cell, 2008 Jun;7(6):949-57 Indirect lacZ - wt vs TF mutant Positive S288c high Pi (SD medium supplemented with 2 mM sodium Pi for 30h)
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids
Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR097C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR098C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR099C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YMR101C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR102C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR103C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YMR105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR106C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR107W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR108W PubMed external link Xiao W et al., Genome, 1988 Dec;30(6):984-6Xiao W et al., Genome, 1988 Dec;30(6):984-6 Indirect Northern blot - wt vs TF mutant Positive Unaccessible sulfometuron methyl
PubMed external link Arndt K et al., Proc Natl Acad Sci U S A, 1986;():Arndt K et al., Proc Natl Acad Sci U S A, 1986;(): Direct DNA footprinting N/A S288c in vitro
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR109W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR110C PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR111C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR112C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR114C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR115W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR116C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR117C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR118C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR119W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR119W-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR120C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR121C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR122W-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YMR123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR124W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR125W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR126C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR127C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR128W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR130W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR132C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR133W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR135C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YMR135W-A PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YMR136W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YMR137C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR138W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR139W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YMR140W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR141C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR142C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR144W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YMR145C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR146C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR147W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR148W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR149W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR150C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR152W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR153W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR153C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR154C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YMR155W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR157C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR158W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YMR158C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR159C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR160W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR161W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR162C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR163C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR164C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR165C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR167W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR168C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR169C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR170C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR171C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR172C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR173W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR173W-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR174C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR175W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR176W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR177W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YMR178W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR179W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR180C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR181C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR182C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR183C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR184W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR185W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR186W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR187C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YMR188C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR189W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR190C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR192W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR193W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR193C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR194W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR194C-A PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR195W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YMR196W PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR197C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR198W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR199W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR200W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR201C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YMR202W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR203W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR204C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR205C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR206W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR207C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR208W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR209C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YMR210W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR211W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR212C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR213W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR214W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR215W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YMR216C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR217W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR218C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR219W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR220W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR221C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YMR222C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR223W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR224C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR225C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR226C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR227C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR228W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR229C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR230W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR231W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR232W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR233W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR234W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR235C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR236W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR237W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR238W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR239C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR240C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR241W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR242C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR243C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR244W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR244C-A PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR245W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR246W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR247C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR250W PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR251W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR251W-A PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR252C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR253C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR254C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR255W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR256C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YMR257C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR258C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR259C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR260C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR261C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR262W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR263W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR265C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR266W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR267W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR268C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR269W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR270C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR271C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR272C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR273C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR274C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR275C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR276W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR277W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR278W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR279C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR280C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR281W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR282C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR283C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR284W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR285C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR286W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YMR287C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR288W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR289W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR290C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR290W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR291W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR292W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR293C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR294W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR295C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR296C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR297W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR298W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YMR299C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR300C PubMed external link Mösch HU et al., J Biol Chem, 1991 Oct 25;266(30):20453-6Mösch HU et al., J Biol Chem, 1991 Oct 25;266(30):20453-6 Indirect Enzyme activity - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR301C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR302C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR303C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR304W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR304C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR305C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR306W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR307W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YMR308C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR309C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR310C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR311C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR312W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YMR313C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR314W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR315W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR316W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR316C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YMR317W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YMR318C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR319C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YMR320W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR321C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR322C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR323W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YMR325W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YMR326C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL339C PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YNL338W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL337W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL336W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL335W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YNL334C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
YNL333W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL331C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL330C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL329C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL328C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YNL327W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL326C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL325C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL324W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL323W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL322C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YNL321W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL320W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL319W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL318C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL317W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL316C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL315C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL314W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL313C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YNL312W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL311C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL310C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNL309W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL308C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YNL307C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL306W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL305C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL304W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL303W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL302C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL301C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL300W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL299W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL298W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL297C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL296W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL295W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL294C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL293W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL292W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL291C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL290W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL289W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNL288W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNL287W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL286W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL284C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL283C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNL282W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL281W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL280C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL279W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL278W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL277W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL275W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL274C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL273W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL272C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL271C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL270C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL269W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL268W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL267W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL266W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL265C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL264C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL263C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL262W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL261W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL260C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL259C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNL258C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL257C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL256W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL255C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL254C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL253W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL252C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL251C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL250W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL249C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL248C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL247W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL246W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL245C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL244C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL243W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL242W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL241C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL240C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL239W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL238W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL237W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL236W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL235C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL234W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL233W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL232W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL231C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL230C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YNL229C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL228W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL227C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL226W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL225C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL224C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL223W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL222W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL221C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL220W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL219C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL218W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL217W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL216W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL215W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL214W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL213C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL212W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL211C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL210W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL209W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL208W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL207W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL206C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL205C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL204C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL203C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL202W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL201C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL200C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL199C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL197C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YNL196C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL195C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL194C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL193W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL192W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL190W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL188W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YNL187W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL186W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL185C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL184C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL183C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL182C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL181W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL180C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL179C PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL178W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Joo YJ et al., Biochim Biophys Acta, 2009;():Joo YJ et al., Biochim Biophys Acta, 2009;(): Direct lacZ - wt vs mutant promoter sequence Positive S288c SC medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL177C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL176C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL175C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL174W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL173C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL171C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL170W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL169C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YNL168C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNL167C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL165W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL164C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL163C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL162W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL162W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL161W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL160W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL159C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL158W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL157W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL155W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL154C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL153C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL152W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL150W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL149C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL148C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL147W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNL146W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL145W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YNL144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL143C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL142W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL141W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL140C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL138W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL137C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL136W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL135C PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNL134C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL133C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL132W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL131W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YNL130C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL129W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL128W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL127W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL126W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL125C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL124W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL122C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL121C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL120C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL119W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL118C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL117W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL115C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL111C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL110C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL108C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL107W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YNL106C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YNL104C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YNL103W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL102W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL101W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YNL100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL099C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL097C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL096C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YNL094W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL091W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL089C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL088W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL087W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL081C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL079C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL078W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL077W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL076W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YNL071W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Proteomics - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YNL070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL069C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL067W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL065W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Velasco I et al., Eukaryot Cell, 2004 Dec;3(6):1492-503Velasco I et al., Eukaryot Cell, 2004 Dec;3(6):1492-503 Indirect lacZ - wt vs TF mutant Negative S288c Cells of the were grown on minimal medium with urea as the sole nitrogen source. At time zero of the experiment, the indicated amino acids were added at a 2 mM final concentration. After 2 h, cells were collected and beta-galactosidase activity was assayed
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL058C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL055C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL053W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL044W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL043C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL037C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL036W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YNL033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL030W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNL029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL028W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YNL026W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNL021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL017C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YNL015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL013C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNL010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNL008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL006W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNL005C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YNL004W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNL002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNR001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Proteomics - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNR002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNR003C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR006W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YNR009W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YNR011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNR014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNR015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNR017W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNR018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNR021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR022C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR025C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNR029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNR030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNR032W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNR032C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YNR033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR034W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNR034W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNR037C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNR043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR044W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNR045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNR046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR047W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YNR048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNR050C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNR055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNR056C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNR057C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNR058W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YNR059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNR063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YNR065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNR066C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YNR067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNR068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR069C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YNR071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNR072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNR074C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YNR075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNR076W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YNR077C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL166C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL165C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL164W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL163W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL162W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL161C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YOL160W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL159C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL158C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL157C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL156W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL155C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL154W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL153C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL152W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL151W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL150C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL149W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL148C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL147C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL146W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL145C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL144W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL143C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL142W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL141W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL140W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL137W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL136C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL135C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL133W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL132W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL131W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL130W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOL129W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL128C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL127W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL126C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL125W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL124C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL123W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOL122C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL121C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL120C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL119C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL115W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL114C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YOL111C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL110W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL109W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL108C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL107W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOL106W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YOL104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOL103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL102C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL101C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL099C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL097C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL096C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL093W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YOL092W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL091W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL089C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL086W-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL086C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL084W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL081W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL079W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL077W-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YOL077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL076W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOL075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL071W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL070C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL069W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YOL067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL066C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL064C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Todeschini AL et al., J Biol Chem, 2006;():Todeschini AL et al., J Biol Chem, 2006;(): Indirect Northern blot - wt vs TF mutant Positive S288c SD medium
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL060C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL059W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL058W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Turner SD et al., Mol Cell Biol, 2002 Jun;22(12):4011-9Turner SD et al., Mol Cell Biol, 2002 Jun;22(12):4011-9 Indirect lacZ - wt vs TF mutant Positive S288c cells grown in rich medium (ariginine-repressing conditions)
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Yoon S et al., Proc Natl Acad Sci U S A, 2004 Aug 10;101(32):11713-8Yoon S et al., Proc Natl Acad Sci U S A, 2004 Aug 10;101(32):11713-8 Indirect Northern blot - wt vs TF mutant Positive S288c cells grown in synthetic medium without arginine, treated with sulfometuron methyl (induction of Gcn4 synthesis by isoleucine-valine starvation)
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Kim SJ et al., Mol Cell Biol, 2005 Dec;25(24):11171-83Kim SJ et al., Mol Cell Biol, 2005 Dec;25(24):11171-83 Direct ChIP N/A S288c exposure to sulfometuron methyl
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Shirra MK et al., J Biol Chem, 2008 Dec 19;283(51):35889-98Shirra MK et al., J Biol Chem, 2008 Dec 19;283(51):35889-98 Indirect Northern blot - wt vs TF mutant Positive S288c SC medium; mid-log phase
PubMed external link Yoon S et al., Biochem Biophys Res Commun, 2009 Mar 27;381(1):123-8Yoon S et al., Biochem Biophys Res Commun, 2009 Mar 27;381(1):123-8 Direct ChIP N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Hong S et al., Amino Acids, 2011 Feb;40(2):623-31Hong S et al., Amino Acids, 2011 Feb;40(2):623-31 Direct Northern blot - wt vs mutant promoter sequence Positive S288c arginine starvation
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Crisucci EM et al., Mol Cell Biol, 2012 Mar;32(6):1150-63Crisucci EM et al., Mol Cell Biol, 2012 Mar;32(6):1150-63 Direct ChIP N/A S288c YPD medium; mid-log phase
PubMed external link Mousley CJ et al., Cell, 2012 Feb 17;148(4):702-15Mousley CJ et al., Cell, 2012 Feb 17;148(4):702-15 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Rosonina E et al., Genes Dev, 2012 Feb 15;26(4):350-5Rosonina E et al., Genes Dev, 2012 Feb 15;26(4):350-5 Direct ChIP N/A S288c aa starvation (Ile and Val)
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Qiu H et al., Genome Res, 2016 Feb;26(2):211-25Qiu H et al., Genome Res, 2016 Feb;26(2):211-25 Direct ChIP N/A S288c Cells grown in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600 = 0.6–0.8), and SM was added at 1 microg/mL for 30 min to induce Gcn4. 
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YOL057W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL056W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL055C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOL054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL053W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL052C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL050C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
YOL049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL048C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL047C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL046C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL044W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL041C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL040C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL037C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL032W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOL031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOL030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL025W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL023W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOL021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL020W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL017W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL016C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL013W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YOL013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOL012C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YOL011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOL010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL009C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOL008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOL006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YOL004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOL003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOL002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR004W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR005C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR008C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YOR009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR011W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR014W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR015W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOR019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YOR022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR024W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YOR025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR026W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR027W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR029W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOR030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR043W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR044W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR048C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR050C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR055W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR060C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YOR065W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YOR066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR069W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR070C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOR072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR076C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR077W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR079C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR080W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR084W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR086C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR087W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR089C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR090C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR091W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR093C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR094W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
YOR095C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR097C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR100C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR101W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR102W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR103C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR104W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR107W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR108W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YOR109W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR110W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR111W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR112W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR114W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR115C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR116C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR118W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR119C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium containing amino acids
Indirect RT-PCR - wt vs TF mutant Negative W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids
YOR120W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect RT-PCR - wt vs TF mutant Negative S288c minimal SDmedia
Indirect RT-PCR - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR121C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR122C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR123C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR124C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR125C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR126C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR127W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YOR128C PubMed external link Stotz A et al., Curr Genet, 1993 Dec;24(6):472-80Stotz A et al., Curr Genet, 1993 Dec;24(6):472-80 Indirect lacZ - wt vs TF mutant Positive S288c histidine starvation
PubMed external link Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69 Indirect Northern blot - wt vs TF mutant Negative S288c Minimal B medium upon glycine removal
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR129C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR130C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR132W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR136W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR137C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR141C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOR142W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR143C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR145C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR146W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR147W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR148C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR149C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR150W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR152C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR153W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR155C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR157C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR158W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR159C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR160W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR161C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR162C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR163W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR164C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR165W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR166C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR167C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR168W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR169C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR170W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR171C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR173W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR174W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR175C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR176W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR177C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR178C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR179C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR180C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR181W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR182C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR183W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR184W PubMed external link Melcher K et al., Curr Genet, 1995 May;27(6):501-8Melcher K et al., Curr Genet, 1995 May;27(6):501-8 Direct DNA footprinting N/A S288c in vitro
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR185C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR186W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YOR187W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR188W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR190W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR192C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR193W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR194C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR195W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR196C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YOR197W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR198C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR199W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR200W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR201C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR202W PubMed external link Kinney DM et al., Mol Cell Biol, 1989 Nov;9(11):4882-8Kinney DM et al., Mol Cell Biol, 1989 Nov;9(11):4882-8 Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -arginine starvation
PubMed external link Arndt K et al., Proc Natl Acad Sci U S A, 1986;():Arndt K et al., Proc Natl Acad Sci U S A, 1986;(): Direct DNA footprinting N/A S288c in vitro
PubMed external link Hope IA et al., Cell, 1985 Nov;43(1):177-88Hope IA et al., Cell, 1985 Nov;43(1):177-88 Direct EMSA N/A S288c in vitro
PubMed external link Hinnebusch AG et al., Proc Natl Acad Sci U S A, 1983 Sep;80(17):5374-8Hinnebusch AG et al., Proc Natl Acad Sci U S A, 1983 Sep;80(17):5374-8 N/A N/A S288c N/A
PubMed external link Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111 Indirect Northern blot - wt vs TF overexpression Positive S288c 50ug/ml 8-azaadenine (purine starvation)
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Joo YJ et al., Eukaryot Cell, 2009 Aug;8(8):1268-77Joo YJ et al., Eukaryot Cell, 2009 Aug;8(8):1268-77 Direct ChIP N/A S288c SC medium w/o histidine + 80 mM 3-amino-1,2,4-triazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64Hernández H et al., Biochem Biophys Res Commun, 2011 Jan 21;404(3):859-64 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR203W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR204W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YOR205C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR206W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR207C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR208W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR209C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR210W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YOR211C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR212W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR213C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR214C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR215C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR216C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR217W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR219C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR220W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR221C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YOR222W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR223W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR224C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR225W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR226C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR227W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR228C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR229W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR230W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR231W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR232W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR234C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR235W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR236W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR237W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR238W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR239W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR241W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR242C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR243C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR244W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Indirect Western blot - wt vs TF mutant Negative S288c 3-aminotriazole
YOR245C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR246C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR247W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR248W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YOR249C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR250C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR251C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR252W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR253W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR254C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR255W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YOR256C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR257W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR258W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR259C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR260W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR261C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR262W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR263C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR264W PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR265W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR266W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR267C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR268C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR269W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR270C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR271C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR272W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR273C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR274W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR275C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR276W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR278W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR279C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YOR280C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR281C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR283W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR284W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR285W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR286W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR287C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR288C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR289W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR290C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR291W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR292C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR293W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR294W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR295W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR296W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR297C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR298W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YOR298C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR299W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR300W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR301W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YOR302W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YOR303W PubMed external link Kinney DM et al., Mol Cell Biol, 1989 Nov;9(11):4882-8Kinney DM et al., Mol Cell Biol, 1989 Nov;9(11):4882-8 Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -arginine starvation
Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -histidine starvation
Indirect lacZ - wt vs TF overexpression Positive W303 Minimal medium -tryptophan starvation
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YOR304W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR305W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR306C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR307C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR308C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR309C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR310C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR311C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR312C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR313C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR314W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR315W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR316C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR317W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR318C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR319W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR320C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR321W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR322C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR323C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR324C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR326W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR327C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR328W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR329C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR330C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR331C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
YOR332W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR334W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR335C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR336W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR337W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YOR338W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR339C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR340C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR341W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR342C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YOR343C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR344C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR345C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR346W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR347C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR348C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR349W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR350C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR351C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR352W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR353C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR354C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR355W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR356W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR357C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR358W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR359W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR360C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR361C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR362C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR363C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR365C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR366W PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR367W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR368W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR369C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR370C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR371C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YOR372C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YOR373W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR374W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR375C PubMed external link Riego L et al., Biochem Biophys Res Commun, 2002 Apr 26;293(1):79-85Riego L et al., Biochem Biophys Res Commun, 2002 Apr 26;293(1):79-85 Indirect lacZ - wt vs TF mutant Positive S288c MM (2% ethanol) medium
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YOR376W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR377W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR378W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR380W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR381W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR382W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534 Indirect RT-PCR - wt vs TF mutant Negative RS-86 Cells cultured to mid-exponential phase in SD medium
YOR383C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534Caballero-Molada M et al., Biochem J, 2018 Apr 30;475(8):1523-1534 Indirect RT-PCR - wt vs TF mutant Negative RS-86 Cells cultured to mid-exponential phase in SD medium
YOR384W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR385W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR386W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YOR387C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR388C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YOR389W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOR390W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR391C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR392W PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR393W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YOR394W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL281C PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YPL280W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YPL279C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YPL278C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL277C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL274W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL273W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL272C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL271W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPL270W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YPL269W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL268W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL267W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL266W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL265W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL264C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL263C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL262W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL261C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL259C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL258C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL257W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL256C PubMed external link Ghavidel A et al., Cell, 2007 Nov 30;131(5):915-26Ghavidel A et al., Cell, 2007 Nov 30;131(5):915-26 Indirect Western blot - wt vs TF mutant Negative S288c log-phase cells grown in YPD exposed to 0.04% methyl methanesulfonate (MMS) for 30 min after synchronization with alpha-factor
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YPL255W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL254W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL253C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL252C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL251W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL250C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Yao Z et al., Autophagy, 2015;11(12):2288-99Yao Z et al., Autophagy, 2015;11(12):2288-99 Indirect RT-PCR - wt vs TF mutant Positive S288c Cells grown in (YPD) and starvation (SD-N) conditions
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YPL249C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL249C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL247C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL246C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL245W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL244C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL243W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL242C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL241C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YPL240C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL239W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL237W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL236C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL235W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL233W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL232W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL231W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL230W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL229W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL228W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL227C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YPL226W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL225W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL224C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL223C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL222W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL221W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL220W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL219W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL218W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPL217C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL216W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YPL215W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL214C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL213W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL212C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL211W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL210C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL209C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL208W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPL207W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL206C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL204W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL203W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL202C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YPL201C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL200W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL199C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL198W PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Negative W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium containing amino acids with 500 microM of auxin
Indirect RT-PCR - wt vs TF mutant Negative W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
YPL197C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL196W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL195W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL194W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YPL193W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL192C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL191C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL190C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL188W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL187W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL186C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL185W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL184C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL183W-A PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL183C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL181W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL180W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL179W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YPL178W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL177C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL176C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL175W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL174C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL173W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL172C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL171C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL170W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL169C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL168W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL167C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL166W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL165C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL164C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YPL163C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPL162C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL161C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL160W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL159C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL158C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL157W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL155C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL154C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL153C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL152W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YPL150W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL149W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL148C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPL147W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL146C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL145C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL144W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL142C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL141C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL140C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL137C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL135W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL134C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL133C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL132W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL131W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL130W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL129W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL128C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL127C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL126W PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL125W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL124W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL123C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL122C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL121C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YPL120W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL119C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL118W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL117C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL115C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL113C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL112C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YPL111W PubMed external link Messenguy F et al., Mol Cell Biol, 1993 Apr;13(4):2586-92Messenguy F et al., Mol Cell Biol, 1993 Apr;13(4):2586-92 Indirect Enzyme activity - wt vs TF mutant Positive 8534-8c Minimal medium
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YPL110C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL109C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL107W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL106C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YPL105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL104W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL103C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL101W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL099C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL097W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL096W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YPL095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL093W PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL092W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL091W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL090C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL089C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL088W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL087W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL086C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL083C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL082C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL081W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL078C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL076W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL074W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL073C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL069C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL068C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL065W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL064C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YPL061W PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Proteomics - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YPL051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL047W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPL045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL042C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL041C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL040C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL039W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPL037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPL034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL032C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YPL031C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL029W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YPL026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL025C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPL019C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL017C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL015C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL014W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPL013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPL012W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPL011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL009C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPL008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL006W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YPL005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL004C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPL001W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR001W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR003C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR004C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR005C PubMed external link Pascual-Ahuir A et al., Mol Cell Biol, 2001 Jan;21(1):16-25Pascual-Ahuir A et al., Mol Cell Biol, 2001 Jan;21(1):16-25 Indirect lacZ - wt vs TF mutant Positive S288c Osmotic stress
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR007C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR012W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR013C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR014C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR015C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR016C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR016W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPR018W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR020W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR021C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YPR022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR026W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR027C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YPR032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR033C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR034W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR035W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium containing amino acids
Indirect RT-PCR - wt vs TF mutant Negative W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids
Indirect RT-PCR - wt vs TF mutant Negative W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR036W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YPR037C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR038W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
YPR039W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
YPR040W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR042C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR044C PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR045C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YPR046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR047W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR057W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR058W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR059C PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR060C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR062W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPR063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR064W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR065W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR067W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR069C PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Negative S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR070W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR071W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR072W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR073C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR074C PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YPR077C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR078C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR079W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR082C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR084W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR085C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR086W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR087W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR089W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR092W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR093C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR095C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR097W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR098C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR099C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR100W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPR101W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR102C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Indirect Western blot - wt vs TF mutant Negative S288c 3-aminotriazole
YPR105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR106W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR108W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR109W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR110C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR111W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR112C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR113W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPR114W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR115W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR116W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YPR117W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR118W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR119W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR120C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR121W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR122W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR123C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR124W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YPR125W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR126C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR127W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR128C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR129W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR130C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR131C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR132W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR133C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR133W-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPR134W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR135W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR136C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR137W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR138C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR139C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR140W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR141C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR142C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR143W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR144C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR145W PubMed external link Dang VD et al., Mol Microbiol, 1996 Nov;22(4):681-92Dang VD et al., Mol Microbiol, 1996 Nov;22(4):681-92 Indirect lacZ - wt vs TF mutant Positive S288c Minimal medium; mid-log phase
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Nishizawa M et al., PLoS Biol, 2008 Dec 23;6(12):2817-30Nishizawa M et al., PLoS Biol, 2008 Dec 23;6(12):2817-30 Indirect lacZ - wt vs TF mutant Positive S288c YNB medium without phosphate + 2mM (high Pi)
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611Iacovella MG et al., Nucleic Acids Res, 2018 Sep 6;46(15):7586-7611 Indirect RT-PCR - wt vs TF mutant Positive W303-1A Strains grown exponentially in complete synthetic medium and transferred for 1 h to 2% glucose medium lacking amino acids with 500 microM of auxin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YPR146C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR147C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR148C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR149W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR151C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR152C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YPR153W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YPR154W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR155C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR156C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR157W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR158W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR159W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR160W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR161C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR162C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR163C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR164W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR165W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR166C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR167C PubMed external link O'Connell KF et al., Mol Cell Biol, 1995;():O'Connell KF et al., Mol Cell Biol, 1995;(): Indirect Northern blot - wt vs TF mutant Positive S288c Yeast cells were grown in SCM lacking aromatic amino acids. From each culture, an initial sample was removed and the remaining portion was adjusted to 1 mM 5-MT, after which additional samples were removed at the times indicated (0, 1h, 2h and 4h)
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR168W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YPR169W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR171W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR172W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR173C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR174C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YPR175W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR176C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR177C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YPR178W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR179C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR180W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR181C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR182W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR183W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YPR184W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR185W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR186C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR187W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR188C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR189W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR190C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YPR191W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR192W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YPR193C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR194C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR195C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR196W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPR197C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YPR198W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR199C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YPR200C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YPR201W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
Q0070 PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
Q0080 PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
Q0115 PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
Q0120 PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Q0130 PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YAL062W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YAL061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAL060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAL059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAL058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAL053W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAL051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YAL048C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YAL047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YAL046C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL044C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69 Indirect Northern blot - wt vs TF mutant Negative S288c Minimal B medium upon glycine removal
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAL043C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL040C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAL039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAL037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAL035W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL034W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YAL034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YAL033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAL032C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YAL029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAL027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL026C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YAL025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAL024C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YAL023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YAL019W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL017W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAL016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL015C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YAL014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YAL013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YAL012W PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YAL011W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YAL009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAL008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAL007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YAL005C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAL004W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YAL003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAL002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAR002W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAR003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAR007C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAR008W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YAR014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAR015W PubMed external link Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111Rolfes RJ et al., Mol Cell Biol, 1993 Aug;13(8):5099-111 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69Subramanian M et al., Mol Microbiol, 2005 Jul;57(1):53-69 Indirect Northern blot - wt vs TF mutant Negative S288c Minimal B medium upon glycine removal
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAR018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAR019C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAR020C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YAR023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAR027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAR028W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAR029W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAR030C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAR031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAR033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAR035W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YAR042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAR044W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAR047C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YAR050W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAR053W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
YAR061W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YAR064W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YAR066W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YAR068W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YAR069C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YAR070C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YAR071W PubMed external link Belova IV et al., Genetika, 1992 May;28(5):11-8Belova IV et al., Genetika, 1992 May;28(5):11-8 Indirect Western blot - wt vs TF mutant Positive unknown N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAR073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YAR075W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL113C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YBL112C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL111C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL109W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL108C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBL108W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL107C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL106C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL105C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL104C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL103C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBL102W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL101C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBL099W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL098W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL097W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL095W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL093C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL090W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL089W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL087C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL086C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YBL085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YBL083C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL082C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YBL081W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL079W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL078C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL077W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL076C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL075C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL073W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL072C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL071W-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL071C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL070C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL069W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL068W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBL066C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL064C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL063W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL062W PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBL061C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL060W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL058W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL054W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL053W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL051C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL050W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL048W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL045C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect RT-PCR - wt vs TF mutant Negative S288c minimal SDmedia
Indirect RT-PCR - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YBL044W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YBL043W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBL042C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBL040C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBL039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL036C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL034C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL033C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBL032W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBL031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YBL030C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL029C-A PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBL029W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL027W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL026W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL025W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL024W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL022C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL021C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL020W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL019W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL018C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBL015W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL013W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL011W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YBL010C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL009W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YBL008W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL006C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBL005W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBL004W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL003C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL002W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBL001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR001C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR002C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR003W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR004C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR005W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR006W PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR007C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR008C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YBR009C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR010W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR011C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YBR012C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YBR013C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR014C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR015C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR016W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR017C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR018C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YBR019C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR020W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR021W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR022W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR023C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR024W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR025C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YBR026C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR028C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YBR029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR031W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR032W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR033W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR034C PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect Microarray analysis - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
Indirect Microarray analysis - wt vs TF mutant Positive S288c minimalSDmedia+3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR035C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR036C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR037C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR038W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR039W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007Mascarenhas C et al., Mol Biol Cell, 2008 Jul;19(7):2995-3007 Indirect RT-PCR - wt vs TF mutant Negative S288c minimal SDmedia
Indirect RT-PCR - wt vs TF mutant Negative S288c minimalSDmedia+0.5mM H2O2 for 15min
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR040W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR042C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR043C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c N/A
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Teixeira MC et al., Microbiology, 2011;():Teixeira MC et al., Microbiology, 2011;(): Indirect lacZ - wt vs TF mutant Positive S288c Entering stationary phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YBR044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YBR045C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YBR046C PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR047W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR048W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 Direct ChIP N/A S288c 3-aminotriazole
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR049C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YBR050C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR052C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
YBR053C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR054W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR055C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR056W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR057C PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR059C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR060C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR061C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR062C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR064W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR066C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR067C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR068C PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Muñoz SA et al., Microbiology (Reading), 2020 Jan;166(1):85-92Muñoz SA et al., Microbiology (Reading), 2020 Jan;166(1):85-92 Indirect lacZ - wt vs TF mutant Positive SBCY03 minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM ammonium sulfate as a nitrogen source
Indirect lacZ - wt vs TF mutant Positive SBCY03 minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM ammonium sulfate as a nitrogen source + 1.3mM leucine for 1h
Indirect lacZ - wt vs TF mutant Positive SBCY03 minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM proline as a nitrogen source
Indirect lacZ - wt vs TF mutant Positive SBCY03 minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM proline as a nitrogen source + 1.3mM leucine for 1h
Indirect lacZ - wt vs TF mutant Positive SBCY03 Cells grown on minimal medium with 2% glucose and 10mM ammonium sulfate up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with 1.3 mM leucine for 1 hour.
Indirect lacZ - wt vs TF mutant Positive SBCY03 Cells grown on minimal medium with 2% glucose and 10mM ammonium sulfate up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with the same composition for 1 hour.
Indirect lacZ - wt vs TF mutant Positive SBCY03 Cells grown on minimal medium with 2% glucose and 10mM proline up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with 1.3 mM leucine for 1 hour.
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR069C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR070C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
YBR071W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR072W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR074W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YBR075W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YBR076W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR078W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR079C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR082C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR083W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YBR084W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR084C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR085W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR085C-A PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR086C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YBR087W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YBR088C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL094C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL093C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL092W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL091C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL090C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL089W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649Goh WS et al., PLoS Comput Biol, 2010 Jan 22;6(1):e1000649 Direct ChIP N/A S288c in vitro
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YJL088W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42Conesa C et al., Mol Cell Biol, 2005 Oct;25(19):8631-42 Indirect Microarray analysis - wt vs TF mutant Positive YNN282 Constitutive derepression conditions;
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Yoon S et al., Biochem Biophys Res Commun, 2009 Mar 27;381(1):123-8Yoon S et al., Biochem Biophys Res Commun, 2009 Mar 27;381(1):123-8 Direct ChIP N/A S288c N/A
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Herbig E et al., Mol Cell Biol, 2010 May;30(10):2376-90Herbig E et al., Mol Cell Biol, 2010 May;30(10):2376-90 Indirect RT-PCR - wt vs TF mutant Positive S288c sulfometuron methyl
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link Brzovic PS et al., Mol Cell, 2011 Dec 23;44(6):942-53Brzovic PS et al., Mol Cell, 2011 Dec 23;44(6):942-53 Indirect RT-PCR - wt vs TF mutant Positive S288c sulfometuron methyl
PubMed external link Crisucci EM et al., Mol Cell Biol, 2012 Mar;32(6):1150-63Crisucci EM et al., Mol Cell Biol, 2012 Mar;32(6):1150-63 Direct ChIP N/A S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YJL087C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL086C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YJL085W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL084C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL083W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL082W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YJL081C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL080C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL079C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJL078C PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL077C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL076W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL075C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL074C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL073W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL072C PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL071W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL070C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL069C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL068C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL067W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL066C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL065C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL063C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL062W-A PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL062W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL061W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL060W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL059W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YJL058C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL057C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL056C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL055W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL054W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL053W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL052C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL052W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL051W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL050W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL049W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL048C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YJL047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL046W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL045W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJL044C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL043W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YJL042W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YJL041W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL039C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL038C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL037W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL036W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL035C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL034W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c YNB medium; mid-log phase
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL033W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Negative S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJL032W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YJL031C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YJL030W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
YJL029C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YLR390W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YKR103W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YKR104W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YLL017W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YPL276W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YPL275W PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR204W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YAR009C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YAL067W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR182C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR196C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YBR219C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR298C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YCL075W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YCL012C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCR108C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNCN0005C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0045W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDR170W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YBR161W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YDR524W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YDL182W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Uluisik I et al., PLoS One, 2011;6(11):e27772Uluisik I et al., PLoS One, 2011;6(11):e27772 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 20 mM boric acid for 1h
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YEL076C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YIL154C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YER053C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YER188C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YFL041W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YGL006W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGL188C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNCJ0004C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
YAR010C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
YNCB0010W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCJ0025W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCN0016C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YGR240C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YHL048C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNCM0031W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YHR007C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR086W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR199C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR212W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YHR213W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YIR021W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YIL171W PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YJL136W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YIL082W-A PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
YIL046W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJR027W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YJR028W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
YJL127C-B PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YJR005C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR026W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
YKL096C-B PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNCE0011C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL068W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL131W PubMed external link Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68Natarajan K et al., Mol Cell Biol, 2001 Jul;21(13):4347-68 Indirect Microarray analysis - wt vs TF mutant Positive S288c SC medium + 100mM 3-aminotriazole
PubMed external link Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36Yin Z et al., Proteomics, 2004 Aug;4(8):2425-36 Indirect Proteomics - wt vs TF mutant Positive S288c SC-HIS medium + 3-aminotriazole
PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR154C-G PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR162W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNCM0036C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YLR264C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNCC0012C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YLR307C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YLR361C-A PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
YNCJ0016C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YLR466C-B PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YML100W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YML054C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YER054C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR175W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YMR230W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YNL277W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YNL146C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL155W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL166W-A PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL097W-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOL038C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR015W PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YOL019W-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR020W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNCD0030W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YOR293C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YOR316C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
YOR381W-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YPL119C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR036W-A PubMed external link Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457Mittal N et al., Nat Commun, 2017 Sep 6;8(1):457 Direct ChIP-seq N/A BY4741 Cells grown on YPD and collected in mid-log phase at OD600 of 0.4-0.8
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YNCO0001C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YAL016C-B PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YAL063C-A PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YAL037C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNCK0002C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBL005W-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
YBR012W-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
YBL101W-A PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
YNCJ0003C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR056W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
YBR072C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YHR047C PubMed external link Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YNB media
PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 Indirect Microarray analysis - wt vs TF overexpression Positive S288c YPD medium; mid-log phase
PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
Direct ChIP-exo N/A CEN.PK 113-5D Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
YNCO0027C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCC0006C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCO0022C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCK0009W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCG0014C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCG0015C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCP0015C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCK0020C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCC0003C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0046W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCP0021W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
YNCD0010C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCG0026W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCO0028W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCO0007W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCP0013C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCE0020C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCE0003W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCM0005C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0042C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCB0003W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0043C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCP0003W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0006W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0041C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCO0015C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCK0001W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCC0011W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YNCN0014W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCE0002W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCI0001W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCK0013W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCG0044C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCH0014W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0017W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0016W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0015W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0014W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0013W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0012W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0005C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCO0026W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCO0014C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCC0007C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCO0009W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0027C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCN0002C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCJ0021C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR012W-B PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
YCL020W PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
YGR161W-C PubMed external link Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 Direct ChIP-seq N/A BY4741 Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
YHR213W-B PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YJR029W PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c SC medium; mid-log phase
PubMed external link Ernst J et al., Mol Syst Biol, 2007;():Ernst J et al., Mol Syst Biol, 2007;(): Direct Chip-on-chip N/A S288c Methylmethane sulfonate stress
YMR046C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
YMR051C PubMed external link Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93Kleinschmidt M et al., Mol Genet Genomics, 2005 Jun;273(5):382-93 Indirect Microarray analysis - wt vs TF mutant Positive S288c 3-aminotriazole
YOR192C-C PubMed external link Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): Indirect Microarray analysis - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Negative CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR159C-A PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YNCM0035C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCP0022W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCA0004W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0004C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0021C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCB0018W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCC0001C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCE0012W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCJ0002C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCK0005C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCL0044W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0010W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCP0004C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
YNCB0005C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0001W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0020W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCE0004C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCJ0017C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCJ0024W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0007C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCO0004C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCP0009W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCP0023W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCE0013W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCK0012C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0020W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0038W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCJ0018W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCC0005W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCB0013W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0009W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0014C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0016C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0009C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0013C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCJ0008W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCK0017W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0007W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCB0015W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0011W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCK0006C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0033C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0004C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCA0006C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCB0006W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0006W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0019C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCD0028W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCE0005W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0002C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCM0009C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCJ0001C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCP0016W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCJ0015W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCB0011C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
ALD1 PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YSC0019 PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCE0007C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YSC0039 PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
YER038W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Direct ChIP N/A CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YBR126W-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0018W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YBR201C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YCL048W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
PubMed external link Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252Srinivasan R et al., PLoS Genet, 2020 Dec;16(12):e1009252 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK Cells cultured for 1h in MM medium (Yeast Nitrogen Base with glucose as a carbon source) + Met (2mM methionine)
YDL007C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YER145C-A PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YKL065W-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YPR010C-A PubMed external link Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200Walvekar AS et al., Mol Biol Cell, 2018 Oct 24;29(26):3183-3200 Indirect RNA-seq - wt vs TF mutant Positive CEN.PK RM (1% yeast extract, 2% peptone, and 2% lactate) medium grown cells shifted to MM (0.17% yeast nitrogen base without amino acids, 0.5% ammonium sulfate, and 2% lactate) medium with methionine supplementation
YNCL0028W PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Negative EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 200 nM Rapamycin
YNCL0016C PubMed external link Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin
Indirect Microarray analysis - wt vs TF mutant Positive EG328-1A RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT
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