S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Gcr1p	YOL086C	PubMed Huie MA et al., Mol Cell Biol, 1992 Jun;12(6):2690-700	Direct	EMSA	N/A	S288c	in vitro
		PubMed Santangelo GM et al., Mol Cell Biol, 1990 Feb;10(2):859-62	Direct	DNA footprinting	Positive	S173-6B	SC medium with glucose/pyruvate
		PubMed LÃ³pez MC et al., J Bacteriol, 2000 Sep;182(17):4970-8	Indirect	Microarray analysis - wt vs TF mutant	Positive	S150-2B	YP medium + 2% lactate + 2% glycerol
		PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Sasaki H et al., Yeast, 2005 Jan 30;22(2):111-27	Indirect	Microarray analysis - wt vs TF mutant	Negative	C179-15C-F16	YPAD medium; mid-log phase
		PubMed Sasaki H et al., Yeast, 2005 Jan 30;22(2):111-27	Indirect	Microarray analysis - wt vs TF mutant	Negative	C179-15C-F16	YPAGL medium; mid-log phase
		PubMed Barbara KE et al., Mol Genet Genomics, 2007 Feb;277(2):171-88	Indirect	Microarray analysis - wt vs TF mutant	Positive	BY263	Cells grown in YEP containing either 2% glucose, 3% galactose or 3% raffinose
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Kim D et al., Appl Environ Microbiol, 2015 Dec;81(24):8392-401	Direct	RT-PCR - wt vs mutant promoter sequence	Positive	S288c	12h growth
		PubMed Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000	Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
		PubMed Cha S et al., Nucleic Acids Res, 2021 Jan 25;49(2):745-759	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	YPD media exponential phase
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C