The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Hot1p
|
YDL022W
|
PubMed
Rep M et al., Mol Cell Biol, 1999 Aug;19(8):5474-85Rep M et al., Mol Cell Biol, 1999 Aug;19(8):5474-85 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
Heat Shock 30ºC - 37ºC 60min |
PubMed
Rep M et al., J Biol Chem, 2000 Mar 24;275(12):8290-300Rep M et al., J Biol Chem, 2000 Mar 24;275(12):8290-300 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD + 0,7M NaCl |
PubMed
Capaldi AP et al., Nat Genet, 2008;():Capaldi AP et al., Nat Genet, 2008;(): |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Ni L et al., Genes Dev, 2009 Jun 1;23(11):1351-63Ni L et al., Genes Dev, 2009 Jun 1;23(11):1351-63 |
Direct |
Chip-on-chip |
N/A |
S288c |
SD medium + NaCl 0,6M 30' |
PubMed
Cook KE et al., G3 (Bethesda), 2012;():Cook KE et al., G3 (Bethesda), 2012;(): |
Direct |
ChIP-seq |
N/A |
S288c |
0,4M NaCl |
PubMed
Burns LT et al., J Biol Chem, 2014 Jun 20;289(25):17668-79Burns LT et al., J Biol Chem, 2014 Jun 20;289(25):17668-79 |
Direct |
ChIP |
N/A |
S288c |
Cells grown in YPD Wt, Dcka2, and exposed to salt stress (0.4 M NaCl) |
PubMed
Bai C et al., Mol Biol Cell, 2015 Jun 15;26(12):2357-74Bai C et al., Mol Biol Cell, 2015 Jun 15;26(12):2357-74 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
Cells grown to logarithmic phase; exposure to NaCl |
PubMed
Gomar-Alba M et al., Biochim Biophys Acta, 2015;():Gomar-Alba M et al., Biochim Biophys Acta, 2015;(): |
Direct |
ChIP |
N/A |
S288c |
exponentially growing cells were left untreated (control) or exposed to salt osmostress (NaCl 0.4 M) for 10 min |
PubMed
Li T et al., Biochim Biophys Acta, 2016 Feb;1859(2):405-19Li T et al., Biochim Biophys Acta, 2016 Feb;1859(2):405-19 |
Direct |
ChIP |
N/A |
S288c |
0.6 M KCl treatment for 25 min |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
|