Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Leu3p
|
YJR016C
|
PubMed
Onda M et al., Gene, 2004;():Onda M et al., Gene, 2004;(): |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPGal + Adenine |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
PubMed
Boer VM et al., FEMS Yeast Res, 2005 Jul;5(10):885-97Boer VM et al., FEMS Yeast Res, 2005 Jul;5(10):885-97 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
CEN.PK540-3A |
Ammonium-limitation: Defined synthetic medium (NH4)2SO4, 1.0 g/l;K2SO4, 5.3 g/l;KH2PO4, 3.0 g/l; MgSO4.7H2O, 0.5 g/l; vitamins and trace elements. |
PubMed
Tang L et al., BMC Genomics, 2006;():Tang L et al., BMC Genomics, 2006;(): |
Indirect |
Microarray analysis - wt vs TF overexpression |
Positive |
BY4741 |
The cells were cultured in uracil dropout medium (YNB-AA (Sigma) 6.7 g/L, 0.77 g/L, Ura DO Supp., and 2% glucose supplemented with G418 at 200 mg/L) with shaking at 30.C. The cells were harvested in log-phase growth (A600 ~ 0.7). |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Chubukov V et al., Proc Natl Acad Sci U S A, 2012 Mar 27;109(13):5127-32Chubukov V et al., Proc Natl Acad Sci U S A, 2012 Mar 27;109(13):5127-32 |
Indirect |
GFP - wt vs TF mutant |
Positive |
S288c |
leucine absence |
PubMed
Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
PubMed
Börlin CS et al., FEMS Microbiol Lett, 2020 Jul 1;367(13):Börlin CS et al., FEMS Microbiol Lett, 2020 Jul 1;367(13): |
Direct |
ChIP-seq |
N/A |
CEN.PK 113-5D |
After 70 h of growth in minimal medium with 2% glucose, at 30.C and 200 rpm, cells were treated with 100 mg/L isoleucine for 2 hours. |
Direct |
ChIP-seq |
N/A |
CEN.PK 113-5D |
After 70 h of growth in minimal medium with 2% glucose, at 30.C and 200 rpm, cells were treated with 100 mg/L leucine for 2 hours. |
Direct |
ChIP-seq |
N/A |
CEN.PK 113-5D |
After 70 h of growth in minimal medium with 2% glucose, at 30.C and 200 rpm, cells were treated with 100 mg/L valine for 2 hours. |
Direct |
ChIP-seq |
N/A |
CEN.PK 113-5D |
After 70 h of growth in minimal medium with 2% glucose, at 30.C and 200 rpm, cells were treated with 20 mg/L leucine for 2 hours. |
Direct |
ChIP-seq |
N/A |
CEN.PK 113-5D |
After 70 h of growth in minimal medium with 2% glucose, at 30.C and 200 rpm. |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |