S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Msn2p	YOR178C	PubMed Tadi D et al., Yeast, 1999 Dec;15(16):1733-45	Indirect	lacZ - wt vs TF mutant	Positive	S288c	Diauxic shift; Late-exponential phase cells cultivated in YNB growth medium (0Â·17% yeast nitrogen base, 0Â·5% ammonium sulphate and 2% glucose)
		PubMed Lai LC et al., Mol Cell Biol, 2005 May;25(10):4075-91	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	SSGal-TEA medium + anaerobiosis (0,19 generations)
		PubMed Capaldi AP et al., Nat Genet, 2008;():Capaldi AP et al., Nat Genet, 2008;():	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium + 0,4M KCl (salt stress)
		PubMed Ni L et al., Genes Dev, 2009 Jun 1;23(11):1351-63	Direct	Chip-on-chip	N/A	S288c	SD medium + NaCl 0,6M 30'
		PubMed Hazelwood LA et al., Appl Environ Microbiol, 2009 Nov;75(21):6876-85	Indirect	Microarray analysis - wt vs TF mutant	Positive	IMZ066	Carbon-limiting (25 g/L glucose, 5 g/L (NH4)2SO4, 3 KH2PO4, 0.5 g/L MgSO4.7H2O, 0.0045 g/L ZnSO4.7H2O)
			Indirect	Microarray analysis - wt vs TF mutant	Positive	IMZ066	Nitrogen-limiting (45 g/L glucose, 1 g/L (NH4)2SO4, 5.3 g/L K2SO4, 3 KH2PO4, 0.5 g/L MgSO4.7H2O, 0.0045 g/L ZnSO4.7H2O)
		PubMed Casado C et al., Biochem J, 2011 Sep 15;438(3):523-33	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	10 min shift to pH=8
		PubMed Elfving N et al., Nucleic Acids Res, 2014 May;42(9):5468-82	Indirect	Microarray analysis - wt vs TF overexpression	Positive	S288c	SD + glucose + estradiol induction
		PubMed Kuang Z et al., Elife, 2017 Sep 26;6(0):e29938	Direct	ChIP-seq	N/A	BY5764	YPD 30.C
		PubMed Pfanzagl V et al., Mol Biol Cell, 2018 Nov 15;29(23):2848-2862	Indirect	Microarray analysis - wt vs TF mutant	Positive	W303-1A	YPD 30.C