The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Msn4p
|
YHR008C
|
PubMed
Boy-Marcotte E et al., J Bacteriol, 1998 Mar;180(5):1044-52Boy-Marcotte E et al., J Bacteriol, 1998 Mar;180(5):1044-52 |
Indirect |
Proteomics - wt vs TF mutant |
Positive |
W303 |
YNB medium |
PubMed
Boy-Marcotte E et al., Mol Microbiol, 1999 Jul;33(2):274-83Boy-Marcotte E et al., Mol Microbiol, 1999 Jul;33(2):274-83 |
Indirect |
Proteomics - wt vs TF mutant |
Positive |
W303-A |
Heat-shock: Exponential-phase cells shifted from 25C to 38C |
PubMed
Causton HC et al., Mol Biol Cell, 2001 Feb;12(2):323-37Causton HC et al., Mol Biol Cell, 2001 Feb;12(2):323-37 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium + 0,05M succinic acid, pH 4,0 |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Eastmond DL et al., J Biol Chem, 2006 Oct 27;281(43):32909-21Eastmond DL et al., J Biol Chem, 2006 Oct 27;281(43):32909-21 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
W303-1A |
Cells grown in YPAD at 30.C to mid-log phase (A600 of 0.5) submitted to heat-shock (37.C, 15 min) |
PubMed
Capaldi AP et al., Nat Genet, 2008;():Capaldi AP et al., Nat Genet, 2008;(): |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium + 0,4M KCl (salt stress) |
PubMed
Kelley R et al., PLoS Genet, 2009 May;5(5):e1000488Kelley R et al., PLoS Genet, 2009 May;5(5):e1000488 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
BY4741 |
YPD 30.C 0.1 mM H2O2 |
PubMed
Watanabe D et al., Appl Environ Microbiol, 2011 Feb;77(3):934-41Watanabe D et al., Appl Environ Microbiol, 2011 Feb;77(3):934-41 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
Sake mash on day 5 |
PubMed
Kuang Z et al., Elife, 2017 Sep 26;6(0):e29938Kuang Z et al., Elife, 2017 Sep 26;6(0):e29938 |
Direct |
ChIP-seq |
N/A |
BY5764 |
YPD 30.C |
|