S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Phd1p	YJR094C	PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Borneman AR et al., Genes Dev, 2006 Feb 15;20(4):435-48	Direct	Chip-on-chip	N/A	S288c	Low nitrogen (SLAD) medium
		PubMed Tam J et al., Nat Commun, 2020 May 8;11(1):2271	Direct	ChIP	N/A	SK1	Cells grown until pre-sporulation stage and were shifted to SPO medium+ glucose
			Direct	ChIP	N/A	SK1	Cells grown until pre-sporulation stage and were shifted to YPD medium
			Direct	ChIP	N/A	SK1	Cells grown until pre-sporulation stage and were shifted to YP medium
			Direct	ChIP	N/A	SK1	Exponential cells; nutrient rich conditions
			Direct	ChIP	N/A	SK1	Shift from rich medium to pre-sporulation medium (SPO), 0 hours timepoint
			Direct	ChIP	N/A	SK1	Shift from rich medium to pre-sporulation medium (SPO), 4 hours timepoint
			Indirect	smFISH - WT vs. TF double mutant	Negative	SK1	Exponential cells; nutrient rich conditions
			Indirect	smFISH - WT vs. TF triple mutant	Negative	SK1	Exponential cells; nutrient rich conditions