Yeastract
YEASTRACT+ INESC-ID IST IBB
Home > Go Back > View Contact/Credits     Tutorial     Help

 

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor
Target
ORF/Genes
References Evidence
Code
Evidence
Experiment
Association
Type
Strain Environmental
Condition
Pho4p YBR296C PubMed external link Ogawa N et al., Mol Biol Cell, 2000 Dec;11(12):4309-21Ogawa N et al., Mol Biol Cell, 2000 Dec;11(12):4309-21 Indirect Microarray analysis - wt vs TF mutant Positive S288c Exponential phase cells cultivated in YPD
PubMed external link Serrano R et al., Mol Microbiol, 2002 Dec;46(5):1319-33Serrano R et al., Mol Microbiol, 2002 Dec;46(5):1319-33 Indirect lacZ - wt vs TF mutant Positive S288c Alkaline pH stress; Cells cultivated in SC medium at pH 8
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Nishizawa M et al., PLoS Biol, 2008 Dec 23;6(12):2817-30Nishizawa M et al., PLoS Biol, 2008 Dec 23;6(12):2817-30 Direct Chip-on-chip N/A S288c YNB medium without phosphate + 0,2microM (low Pi; phosphate limitation)
PubMed external link Dos Santos SC et al., Mol Genet Genomics, 2011;():Dos Santos SC et al., Mol Genet Genomics, 2011;(): Indirect lacZ - wt vs TF mutant Positive S288c quinine stress
PubMed external link Aow JS et al., Nucleic Acids Res, 2013 May;41(9):4877-87Aow JS et al., Nucleic Acids Res, 2013 May;41(9):4877-87 Direct ChIP N/A S288c low phosphate
PubMed external link Serra-Cardona A et al., Mol Cell Biol, 2014 Dec;34(24):4420-35Serra-Cardona A et al., Mol Cell Biol, 2014 Dec;34(24):4420-35 Indirect Western blot - wt vs TF mutant Positive S288c Cells were subjected to pH 8.0 for 90, 120, 180 min followed by immunoblotting using anti-HA antibodies to reveal HA-tagged Pho89
PubMed external link He et al., Elife, 2017;6(0):e25157He et al., Elife, 2017;6(0):e25157 Indirect RNA-seq - wt vs TF mutant Positive EY0057 pho80DELTA EY0057 pho80DELTA; Minimal medium; mid-log phase
PubMed external link Gurvich Y et al., PLoS Biol, 2017 Dec 13;15(12):e2002039Gurvich Y et al., PLoS Biol, 2017 Dec 13;15(12):e2002039 Indirect RNA-seq - wt vs TF mutant Positive BY4741 BY4741; SC medium; Phosphate(i) starvation condition; 30.C; mid-log phase
Indirect RNA-seq - wt vs TF mutant Positive BY4741 PHO84-constitutive BY4741 PHO84c; SC medium; yeast cell recovery into 20mM P(i) from low P(i); 30.C; 2h growth
w3c xhtml validator w3c css validator