Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Rap1p
|
YAL068C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAL067C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YAL064C-A
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAL064W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR090C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR092C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR093C
|
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
Direct |
EMSA |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR095C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR105C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR106W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR111C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR112C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR113W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR114W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR117C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR118W
|
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
De Sanctis V et al., J Mol Biol, 2002 Apr 26;318(2):333-49De Sanctis V et al., J Mol Biol, 2002 Apr 26;318(2):333-49 |
Direct |
DNA footprinting |
N/A |
S288c |
exponentially growing cells in YNB medium supplemented with amino acids and glucose were shifted to amino acid-deprived medium and grown for 1H (YNB medium without amino acids or glucose) |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR121C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YBR126C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR127C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR128C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YBR138C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YBR139W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YBR141C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR145W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR146W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR147W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR155W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR157C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR158W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR160W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YBR162C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR167C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR170C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR177C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR178W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR179C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR180W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR181C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR182C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR183W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR185C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR187W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR188C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR189W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR190W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR191W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR194W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR196C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR197C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR199W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR202W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR203W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR205W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR211C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YBR212W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR214W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YBR215W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR220C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR221C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR227C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR229C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YBR230C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR231C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR233W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR239C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR241C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR243C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YBR247C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR248C
|
PubMed
Yarragudi A et al., Mol Cell Biol, 2004 Oct;24(20):9152-64Yarragudi A et al., Mol Cell Biol, 2004 Oct;24(20):9152-64 |
Direct |
alpha-galactosidase - WT vs target promoter mutant |
N/A |
S288c |
N/A |
YBR249C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR250W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YBR252W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR255W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR265W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR267W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR266C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR282W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YBR283C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR287W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR288C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR289W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR290W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR293W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR294W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR295W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR296C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR301W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCL076W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL073C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCL068C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL067C
|
PubMed
Shore D et al., Cell, 1987 Dec 4;51(5):721-32Shore D et al., Cell, 1987 Dec 4;51(5):721-32 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCL066W
|
PubMed
Shore D et al., Cell, 1987 Dec 4;51(5):721-32Shore D et al., Cell, 1987 Dec 4;51(5):721-32 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCL065W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL064C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCL063W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YCL055W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCL054W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCL050C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCL049C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCL043C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCL041C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL042W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YCL040W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCL037C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCL036W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCL032W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCL031C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCL030C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCL029C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCL028W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL027W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YCL026C-A
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YCL025C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL023C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL024W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL021W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL018W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL009C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCL002C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCL001W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCR004C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCR005C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCR006C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR007C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR008W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YCR009C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR010C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR011C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR012W
|
PubMed
Chambers A et al., Mol Cell Biol, 1989 Dec;9(12):5516-24Chambers A et al., Mol Cell Biol, 1989 Dec;9(12):5516-24 |
Direct |
EMSA |
N/A |
S288c |
N/A |
PubMed
Graham IR et al., Mol Cell Biol, 1999 Nov;19(11):7481-90Graham IR et al., Mol Cell Biol, 1999 Nov;19(11):7481-90 |
Indirect |
Northern blot - WT vs TF mutant |
Positive |
NCYC 1445 |
SC medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR013C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCR016W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCR020C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCR021C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCR024C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR025C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR026C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR028C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCR031C
|
PubMed
Moehle CM et al., Mol Cell Biol, 1991 May;11(5):2723-35Moehle CM et al., Mol Cell Biol, 1991 May;11(5):2723-35 |
Indirect |
LacZ - WT vs TF mutant |
Positive |
S288c |
histidine starvation |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR032W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR034W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCR037C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCR038C
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR039C
|
PubMed
Shore D et al., Cell, 1987 Dec 4;51(5):721-32Shore D et al., Cell, 1987 Dec 4;51(5):721-32 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR040W
|
PubMed
Shore D et al., Cell, 1987 Dec 4;51(5):721-32Shore D et al., Cell, 1987 Dec 4;51(5):721-32 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR041W
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR042C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YCR045C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCR046C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCR047C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCR053W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCR063W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR065W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR068W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR069W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YCR071C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YCR077C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YCR079W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCR081W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCR087W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCR087C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YCR094W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YCR096C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCR097W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCR097W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR098C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR104W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCR105W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YCR107W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDL238C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL230W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL229W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL227C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL226C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL225W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL222C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL220C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YDL212W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDL204W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDL199C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDL198C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDL195W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL192W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL191W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL188C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL187C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL186W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL184C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL183C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL180W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL174C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL173W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL169C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL168W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL156W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL153C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL147W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL145C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL140C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL138W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDL137W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL136W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL135C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL133C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL133W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL132W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL130W-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL130W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL129W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL128W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL127W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL126C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL121C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL105W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL104C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL102W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL101C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL099W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDL095W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL093W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDL091C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDL088C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDL084W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL083C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL082W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9 |
Direct |
ChIP |
N/A |
S288c |
in vitro |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL081C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YDL078C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL076C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL075W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL074C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL067C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL063C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL062W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL061C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL060W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL059C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL056W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDL055C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL054C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL052C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDL049C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDL048C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL047W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL044C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDL041W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL035C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL034W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL033C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL032W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDL031W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL023C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL022W
|
PubMed
Eriksson P et al., J Biol Chem, 2000 Sep 22;275(38):29368-76Eriksson P et al., J Biol Chem, 2000 Sep 22;275(38):29368-76 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDL021W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL014W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL012C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDL008W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL006W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL001W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR012W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YDR019C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDR021W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR023W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR024W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YDR025W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Knight B et al., Genes Dev, 2014 Aug 1;28(15):1695-709Knight B et al., Genes Dev, 2014 Aug 1;28(15):1695-709 |
Direct |
ChIP |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR028C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR029W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR030C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR032C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR033W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR036C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR037W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR039C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR040C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR041W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR042C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR043C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR044W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR046C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR047W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR050C
|
PubMed
Scott EW et al., Mol Cell Biol, 1993 Jan;13(1):543-50Scott EW et al., Mol Cell Biol, 1993 Jan;13(1):543-50 |
Direct |
LacZ - WT vs mutant promoter sequence |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR051C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR058C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR061W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR062W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR063W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR064W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR065W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR070C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR071C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR072C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR076W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR077W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR086C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR091C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR094W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR095C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YDR098C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR099W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR100W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR109C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR110W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR111C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR112W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR113C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR116C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR123C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR129C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR130C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR131C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR132C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR133C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR134C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR135C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR136C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR137W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR140W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR145W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR146C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR147W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR148C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR152W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR154C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR155C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR156W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR158W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR167W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR168W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR173C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR174W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR176W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR178W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR179C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR179W-A
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR185C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR186C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR187C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR188W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR189W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR191W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR192C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDR193W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR194C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR196C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR198C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR202C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR207C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDR209C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR210W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR211W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR212W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR218C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR221W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR224C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
Chip-on-chip |
N/A |
S288c |
Senescence |
YDR225W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR226W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR229W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR230W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR233C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR234W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR246W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR247W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR248C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDR249C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR251W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR256C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR258C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR259C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR260C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR261C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR262W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR264C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR265W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR268W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR273W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR274C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YDR275W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR276C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR277C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR278C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR281C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR284C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR286C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR289C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR290W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR293C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR297W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR299W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR300C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR301W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR309C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR310C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR311W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR312W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR314C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR318W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR319C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR321W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR322W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR324C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR325W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR326C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR330W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR336W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDR341C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR343C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR344C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR346C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR351W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR353W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR354W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR358W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR366C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR380W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR381W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR382W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YDR385W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDR386W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR387C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR388W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR391C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR392W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR393W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR396W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR397C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR399W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR403W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR404C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR405W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR406W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR408C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR409W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR416W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR417C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR418W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YDR420W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR421W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR423C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR432W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR434W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR441C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR442W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR447C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR448W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR449C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR450W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR451C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDR452W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR454C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR458C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR461W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR462W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YDR463W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR470C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR471W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8 |
Direct |
ChIP |
N/A |
S288c |
YPD medium 39ºC (heat shock) |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR473C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR476C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR481C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR487C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR488C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YDR489W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR495C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR496C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR500C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR501W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR502C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR509W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR510W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR511W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR513W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR516C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR517W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR525W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR527W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR532C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR533C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR536W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YDR537C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR541C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR542W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR543C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR544C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR545W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YEL075C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YEL074W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YEL073C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YEL072W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL071W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YEL064C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YEL063C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YEL058W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YEL057C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YEL056W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL054C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9 |
Direct |
ChIP |
N/A |
S288c |
in vitro |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL053C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL046C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL045C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YEL044W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL043W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YEL042W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YEL040W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YEL037C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YEL036C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL035C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL034W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8 |
Direct |
ChIP |
N/A |
S288c |
YPGal medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL032W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YEL027W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YEL026W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YEL025C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YEL024W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YEL023C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL022W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YEL021W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YEL020W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YEL020C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YEL017C-A
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YEL017W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YEL015W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YEL009C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL008W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL007W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YEL006W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YEL001C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YER001W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YER002W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER003C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER006W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER009W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER010C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER011W
|
PubMed
Fantino E et al., Mol Gen Genet, 1992 Dec;236(1):65-75Fantino E et al., Mol Gen Genet, 1992 Dec;236(1):65-75 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
YER019W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YER023W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER024W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER025W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER026C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER027C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER028C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER029C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER030W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER031C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER032W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER033C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER034W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER035W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER036C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER037W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER038C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER039C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YER040W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YER042W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER043C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER044C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER045C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER046W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER047C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER048C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER050C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER052C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER053C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YER055C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER056C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER056C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER057C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER060W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YER060W-A
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YER062C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER063W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER064C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER065C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER068W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER069W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YER072W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER073W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER074W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER074W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER078C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER080W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER081W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER086W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER088C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER089C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER091C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER091C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER092W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER093C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER094C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YER095W
|
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
YER101C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER102W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER103W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER106W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER111C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER115C
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER116C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER117W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8 |
Direct |
ChIP |
N/A |
S288c |
YPD medium 39ºC (heat shock) |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER118C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER119C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YER119C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER120W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER123W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER125W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER127W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER128W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER130C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER131W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER138W-A
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER144C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER145C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER146W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER152C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER154W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER155C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER156C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER158C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER162C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER165W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER166W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER167W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER168C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER169W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YER173W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER177W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER178W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER179W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER183C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YER186C
|
PubMed
Xue Y et al., PLoS Genet, 2011 Dec;7(12):e1002417Xue Y et al., PLoS Genet, 2011 Dec;7(12):e1002417 |
Direct |
ChIP |
N/A |
S288c |
cdc13-1 cells, grown overnight at 21°C, followed by 7 hours at 36°C to induce telomere uncapping |
YER188W
|
PubMed
Xue Y et al., PLoS Genet, 2011 Dec;7(12):e1002417Xue Y et al., PLoS Genet, 2011 Dec;7(12):e1002417 |
Direct |
ChIP |
N/A |
S288c |
cdc13-1 cells, grown overnight at 21°C, followed by 7 hours at 36°C to induce telomere uncapping |
YER189W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER190W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YFL064C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFL063W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFL062W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFL056C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFL055W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YFL054C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YFL052W
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL051C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFL050C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFL045C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFL039C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFL034C-B
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFL034C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL034W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL031W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFL030W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YFL029C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YFL027C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFL024C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL023W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL022C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFL021W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL020C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFL018C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFL016C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL015C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL014W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFL013C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFL010C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFL004W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFR002W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR003C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR004W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR007W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YFR008W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR010W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR015C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YFR017C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YFR018C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YFR019W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFR021W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFR022W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR023W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YFR028C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YFR029W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YFR031C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR031C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFR032C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFR032C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YFR033C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFR034C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YFR035C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YFR038W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR041C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFR043C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YFR047C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFR051C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YFR053C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFR054C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YFR057W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL263W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL262W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL261C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGL259W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL258W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL258W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL255W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGL253W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL250W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL242C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGL241W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGL240W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL236C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGL234W
|
PubMed
Chambers A et al., Mol Cell Biol, 1989 Dec;9(12):5516-24Chambers A et al., Mol Cell Biol, 1989 Dec;9(12):5516-24 |
Direct |
EMSA |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Mol Cell Biol, 2004 Oct;24(20):9152-64Yarragudi A et al., Mol Cell Biol, 2004 Oct;24(20):9152-64 |
Direct |
alpha-galactosidase - WT vs target promoter mutant |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL233W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGL229C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL227W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGL226C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL226W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL225W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL224C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL222C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL211W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGL208W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL207W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL202W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGL200C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL189C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL188C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL187C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL184C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGL181W
|
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL180W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL179C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL177W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL175C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL171W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL168W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL167C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL166W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGL159W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL158W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL156W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL147C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL146C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL145W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL142C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGL141W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGL137W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGL136C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL135W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL129C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL128C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL126W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YGL124C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL123W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL121C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
YGL119W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL116W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL115W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL114W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL111W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL107C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL104C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL103W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Knight B et al., Genes Dev, 2014 Aug 1;28(15):1695-709Knight B et al., Genes Dev, 2014 Aug 1;28(15):1695-709 |
Direct |
ChIP |
N/A |
S288c |
YPD |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL102C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL101W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGL097W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL096W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL091C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL090W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGL086W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL084C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL083W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL081W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL077C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL076C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL075C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL074C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL073W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL072C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL071W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL062W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL056C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL055W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL052W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL048C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL047W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL044C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL043W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL040C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL039W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL037C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL036W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL032C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL031C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL030W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Schawalder SB et al., Nature, 2004 Dec 23;432(7020):1058-61Schawalder SB et al., Nature, 2004 Dec 23;432(7020):1058-61 |
Direct |
ChIP |
N/A |
W303 |
Diauxic shift, YPAD (2% Bactopeptone, 1% yeast extract, 0.01% adenine, 2% Glucose). |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Knight B et al., Genes Dev, 2014 Aug 1;28(15):1695-709Knight B et al., Genes Dev, 2014 Aug 1;28(15):1695-709 |
Direct |
ChIP |
N/A |
S288c |
YPD |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Li T et al., Biochim Biophys Acta, 2016 Feb;1859(2):405-19Li T et al., Biochim Biophys Acta, 2016 Feb;1859(2):405-19 |
Direct |
ChIP |
N/A |
S288c |
0.6M KCl |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL028C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL016W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL012W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL011C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL009C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL008C
|
PubMed
Capieaux E et al., J Biol Chem, 1989 May 5;264(13):7437-46Capieaux E et al., J Biol Chem, 1989 May 5;264(13):7437-46 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Ahn SH et al., EMBO J, 2009 Feb 4;28(3):205-12Ahn SH et al., EMBO J, 2009 Feb 4;28(3):205-12 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGL007W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGL004C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGL002W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL001C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR004W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR005C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR008C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR009C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR012W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGR013W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR014W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR018C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR019W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR027C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR028W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR031W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR032W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR033C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR034W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR035C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGR036C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR037C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR043C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR044C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR048W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR049W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR050C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR051C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR052W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR054W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR055W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR059W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR060W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR061C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR063C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR067C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR068C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGR070W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR074W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR078C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR083C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGR084C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR085C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Zhu C et al., Genome Res, 2009 Apr;19(4):556-66Zhu C et al., Genome Res, 2009 Apr;19(4):556-66 |
Direct |
ChIP |
N/A |
S288c |
30 min of diamide treatment |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR086C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR087C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR088W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR089W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGR090W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR091W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR092W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR093W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR096W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR097W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR102C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR108W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGR110W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR112W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGR113W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR117C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR118W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR119C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR123C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR124W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR125W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YGR126W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR127W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGR129W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR130C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR138C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR139W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR140W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR142W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR143W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR145W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR148C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR149W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR151C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR153W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR155W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR156W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR157W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR159C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR160W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR161C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR174C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGR175C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR176W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR177C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YGR178C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR180C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Tomar RS et al., EMBO J, 2008 Jun 4;27(11):1575-84Tomar RS et al., EMBO J, 2008 Jun 4;27(11):1575-84 |
Indirect |
Northern blot - WT vs TF mutant |
Positive |
S288c |
Methylmethane sulfonate stress |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR181W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR182C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGR186W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR192C
|
PubMed
Bitter GA et al., Mol Gen Genet, 1991 Dec;231(1):22-32Bitter GA et al., Mol Gen Genet, 1991 Dec;231(1):22-32 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Yagi S et al., J Vet Med Sci, 1994 Apr;56(2):235-44Yagi S et al., J Vet Med Sci, 1994 Apr;56(2):235-44 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR193C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR196C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR202C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR203W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR204W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR207C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR211W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR213C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR214W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YGR216C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGR217W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR224W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR226C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR227W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR233C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR234W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR238C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR240C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR241C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR243W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGR248W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR249W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR251W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR253C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR254W
|
PubMed
Brindle PK et al., Mol Cell Biol, 1990 Sep;10(9):4872-85Brindle PK et al., Mol Cell Biol, 1990 Sep;10(9):4872-85 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
YGR256W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR257C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR258C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR259C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR260W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR261C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YGR262C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR270W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR279C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR280C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR283C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR284C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR285C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR288W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YGR294W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR295C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR296W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL049C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL048W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL046C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHL045W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL043W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YHL040C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHL038C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHL037C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHL036W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL033C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHL032C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHL031C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHL029C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHL028W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL021C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHL016C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHL015W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHL013C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHL007C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YHL003C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHL002W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHL001W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR001W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YHR004C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YHR005C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR007C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR009C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR010W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
ChIP-seq |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR017W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR019C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR020W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR021C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR021W-A
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR025W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR026W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR029C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR032W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR033W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YHR036W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YHR037W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YHR049W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YHR057C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR060W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR061C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YHR065C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR066W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR068W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR070W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YHR071W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR077C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YHR081W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR082C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR083W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR084W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR088W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR090C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR091C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YHR092C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR093W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR094C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR095W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR096C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR097C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR102W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR108W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR109W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR112C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YHR113W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR119W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR121W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR122W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR123W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR128W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR129C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR131C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR132W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR133C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR135C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR136C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR137W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR138C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YHR139C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YHR140W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YHR141C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR142W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR143W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR146W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR147C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YHR148W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR151C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YHR152W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YHR156C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR161C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR163W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR173C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR174W
|
PubMed
Brindle PK et al., Mol Cell Biol, 1990 Sep;10(9):4872-85Brindle PK et al., Mol Cell Biol, 1990 Sep;10(9):4872-85 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Willett CE et al., Mol Cell Biol, 1993 Apr;13(4):2623-33Willett CE et al., Mol Cell Biol, 1993 Apr;13(4):2623-33 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR175W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR177W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR178W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YHR179W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR183W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR184W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YHR193C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR196W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR197W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR201C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR203C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR204W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YHR208W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR209W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YHR210C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YHR215W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR216W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR217C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL177C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YIL176C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL169C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIL162W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIL158W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YIL155C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL151C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YIL149C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL148W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8 |
Direct |
ChIP |
N/A |
S288c |
YPD medium 39ºC (heat shock) |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL147C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL144W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL143C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIL138C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL136W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIL134W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL133C
|
PubMed
Moehle CM et al., Mol Cell Biol, 1991 May;11(5):2723-35Moehle CM et al., Mol Cell Biol, 1991 May;11(5):2723-35 |
Indirect |
LacZ - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL132C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL127C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL126W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YIL124W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL123W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL122W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL121W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL119C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL118W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL117C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIL116W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL107C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIL101C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YIL100W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL099W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL098C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL094C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL091C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL078W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL075C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL074C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL069C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL068C
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL066C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Tomar RS et al., EMBO J, 2008 Jun 4;27(11):1575-84Tomar RS et al., EMBO J, 2008 Jun 4;27(11):1575-84 |
Indirect |
Northern blot - WT vs TF mutant |
Positive |
S288c |
Methylmethane sulfonate stress |
YIL063C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL057C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL056W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL055C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL054W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL053W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL052C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL051C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL050W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YIL048W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YIL047C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL046W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL042C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL037C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIL035C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL033C
|
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL032C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL022W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YIL020C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL019W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL018W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8 |
Direct |
ChIP |
N/A |
S288c |
YPD medium 39ºC (heat shock) |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
ChIP-seq |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIL016W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL015W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL013C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL012W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL011W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL002C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL001W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIR004W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIR005W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YIR009W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIR011C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIR012W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIR013C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YIR014W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIR015W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIR016W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YIR017C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YIR018W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIR019C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIR021W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YIR025W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIR027C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIR030C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIR031C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIR034C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIR041W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YIR042C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIR043C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YIR044C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJL225C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YJL223C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJL218W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL213W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YJL212C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL210W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL207C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL206C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL205C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL200C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL196C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL193W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL192C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL191W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL190C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Bernstein BE et al., Genome Biol, 2004;5(9):R62Bernstein BE et al., Genome Biol, 2004;5(9):R62 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL189W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL184W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL183W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL180C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJL178C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9 |
Direct |
ChIP |
N/A |
S288c |
in vitro |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL177W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9 |
Direct |
ChIP |
N/A |
S288c |
in vitro |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL173C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL170C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL167W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL164C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL159W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL158C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL157C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL153C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJL149W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL148W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL146W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL138C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL137C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL136C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL135W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL134W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL133W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL130C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL129C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL127W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL123C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL121C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL119C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL116C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
YJL115W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
YJL110C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL107C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL106W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL102W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJL101C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL097W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL096W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL095W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL028W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL027C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL026W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Tomar RS et al., EMBO J, 2008 Jun 4;27(11):1575-84Tomar RS et al., EMBO J, 2008 Jun 4;27(11):1575-84 |
Indirect |
Northern blot - WT vs TF mutant |
Positive |
S288c |
Methylmethane sulfonate stress |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL025W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YJL020C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL012C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL011C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL010C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL007C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR008W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YJR009C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR010W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
ChIP-seq |
N/A |
S288c |
YPD |
YJR011C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YJR015W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR016C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR021C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJR024C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR025C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR034W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YJR043C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR044C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJR045C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR047C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR048W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR050W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJR051W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR058C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR059W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR070C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR073C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR074W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR075W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJR078W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJR091C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YJR092W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YJR094C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJR094W-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR101W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJR103W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR104C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR105W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR108W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR109C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YJR113C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJR114W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJR115W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR116W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJR118C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR119C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR122W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR123W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Uprety B et al., Nucleic Acids Res, 2012 Mar;40(5):1969-83Uprety B et al., Nucleic Acids Res, 2012 Mar;40(5):1969-83 |
Direct |
ChIP |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR124C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR129C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJR130C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR131W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJR132W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR133W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR134C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR135C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR135W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR137C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YJR138W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJR139C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR140C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR142W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJR143C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR145C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJR146W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR147W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJR148W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJR150C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR151C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR152W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR155W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR158W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR159W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL225W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL224C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL222C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL220C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL219W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL215C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL211C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL210W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL206C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YKL204W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL201C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL198C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL192C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL188C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YKL183W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL182W
|
PubMed
Schüller HJ et al., Eur J Biochem, 1994 Oct 1;225(1):213-22Schüller HJ et al., Eur J Biochem, 1994 Oct 1;225(1):213-22 |
Direct |
LacZ - WT vs mutant promoter sequence |
Positive |
S288c |
SCD medium |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL181W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL180W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL178C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL177W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL176C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL175W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL172W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL164C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL161C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL157W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL156W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL153W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL152C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL151C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL150W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Zhu C et al., Genome Res, 2009 Apr;19(4):556-66Zhu C et al., Genome Res, 2009 Apr;19(4):556-66 |
Direct |
ChIP |
N/A |
S288c |
30 min of diamide treatment |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL148C
|
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
YKL147C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL143W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL141W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YKL135C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL133C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL127W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL125W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL124W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL123W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL122C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL120W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL116C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YKL110C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL109W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL108W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL103C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL098W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YKL097C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL096W-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL096W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL088W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL087C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL086W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YKL085W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Indirect |
RT-PCR - WT vs TF mutant |
Positive |
S288c |
Senescence |
YKL084W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL083W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL082C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL081W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL079W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL074C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL072W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL071W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL070W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL069W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL067W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL066W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL063C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL062W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL060C
|
PubMed
Compagno C et al., FEBS Lett, 1991;():Compagno C et al., FEBS Lett, 1991;(): |
Direct |
LacZ - WT vs mutant promoter sequence |
Positive |
S288c |
Minimal medium + glycerol plus ethanol |
Direct |
LacZ - WT vs mutant promoter sequence |
Positive |
S288c |
Minimal medium; mid-log phase |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL059C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL058W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL056C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL054C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL053C-A
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YKL052C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YKL049C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL048C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL047W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL046C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YKL045W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL044W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL043W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL041W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL040C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL039W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL038W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL033W-A
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL033W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL032C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YKL031W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YKL030W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL029C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YKL028W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL026C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL024C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL023W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL022C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL019W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YKL017C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL016C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
ChIP-seq |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL015W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL012W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL010C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL009W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL006C-A
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL006W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKL001C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKR009C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YKR012C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YKR013W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR014C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR016W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR022C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR024C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKR025W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKR029C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR040C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKR041W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKR042W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR050W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YKR052C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKR053C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKR054C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YKR056W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKR057W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YKR059W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKR064W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR065C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKR068C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YKR078W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YKR080W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YKR085C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YKR086W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YKR087C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKR092C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKR093W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKR094C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKR096W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR100C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR101W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKR102W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YKR105C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKR106W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL067C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLL066C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLL065W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL064C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLL063C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL061W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLL059C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLL057C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLL056C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL055W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL052C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLL051C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLL050C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL049W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL048C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YLL045C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLL043W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL041C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLL040C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLL039C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLL038C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLL037W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL036C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLL035W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLL034C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLL029W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL028W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL026W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL024C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLL019C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLL018C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YLL003W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLL002W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLL001W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR003C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR004C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR005W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR008C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR012C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR013W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR014C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR023C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR024C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR025W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR026C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR027C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR028C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR029C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YLR030W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR031W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR037C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR040C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR043C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR044C
|
PubMed
Butler G et al., Mol Gen Genet, 1990 Sep;223(3):449-56Butler G et al., Mol Gen Genet, 1990 Sep;223(3):449-56 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Liesen T et al., Mol Microbiol, 1996 Aug;21(3):621-32Liesen T et al., Mol Microbiol, 1996 Aug;21(3):621-32 |
Direct |
DNA footprinting |
N/A |
S288c |
in vitro |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR045C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR046C
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR047C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR048W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR056W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR057W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR058C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR060W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR061W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Bernstein BE et al., Genome Biol, 2004;5(9):R62Bernstein BE et al., Genome Biol, 2004;5(9):R62 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR062C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR068W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR073C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR074C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR075W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR076C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR079W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR080W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR083C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR084C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR086W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR088W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR094C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR096W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR100W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR101C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR103C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR104W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR107W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR108C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR110C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR111W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR112W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR113W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR117C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR119W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR128W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR131C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR132C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR133W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR134W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR136C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR137W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR139C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR140W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR141W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR142W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR145W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR149C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR153C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR162W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR163C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR164W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR165C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR166C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR167W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR171W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR173W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR174W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YLR176C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR177W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YLR178C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR179C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR180W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR182W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR183C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR184W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YLR185W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Schawalder SB et al., Nature, 2004 Dec 23;432(7020):1058-61Schawalder SB et al., Nature, 2004 Dec 23;432(7020):1058-61 |
Direct |
ChIP |
N/A |
W303 |
Diauxic shift, YPAD (2% Bactopeptone, 1% yeast extract, 0.01% adenine, 2% Glucose). |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR189C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR190W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR194C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR197W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR203C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR212C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR213C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR214W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR220W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR221C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR223C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR224W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR225C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR231C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR233C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR235C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR236C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR237W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR238W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR239C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR243W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR244C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR245C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR248W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR249W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR254C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR255C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR256W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR257W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR259C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR264W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR265C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR267W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR268W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR271W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR273C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR276C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR279W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR280C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR283W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR286C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR287C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR287C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR288C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR289W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR293C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR294C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR295C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR299W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR300W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR301W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR302C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR303W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR304C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR306W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR307W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR310C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR312C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR312W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR313C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR314C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR324W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR325C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR326W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR327C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR328W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR329W
|
PubMed
Jiao K et al., Yeast, 2002 Jan 30;19(2):99-114Jiao K et al., Yeast, 2002 Jan 30;19(2):99-114 |
Indirect |
LacZ - WT vs TF mutant |
Positive |
S288c |
SPO (sporulation) medium |
YLR333C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR334C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR335W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR336C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YLR337C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YLR338W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YLR339C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR340W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR341W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR342W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR343W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR344W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR346C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR349W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR354C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR355C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR356W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR357W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR359W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR367W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YLR372W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR378C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR379W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR380W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR383W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR387C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR388W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR389C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR390W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR392C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YLR394W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR396C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR397C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR398C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR399C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR400W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YLR401C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR402W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YLR403W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR405W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR406C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YLR407W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR408C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YLR412W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR413W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR415C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR417W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR427W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YLR431C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR432W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR436C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR437C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR438W
|
PubMed
Park HD et al., J Bacteriol, 1999 Nov;181(22):7052-64Park HD et al., J Bacteriol, 1999 Nov;181(22):7052-64 |
Indirect |
LacZ - WT vs TF mutant |
Positive |
S288c |
proline/proline+oxalurate |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR438C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR439W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR441C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR442C
|
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
Direct |
EMSA |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR447C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR448W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR452C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR453C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR458W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR460C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR461W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR462W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR463C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR465C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR466W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YLR467W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML133C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YML128C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML126C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YML125C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML123C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YML122C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML121W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML120C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YML117W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML114C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YML101C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML101C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YML100W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YML099C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML090W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML089C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML088W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML087C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YML086C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YML073C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YML072C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YML069W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML066C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YML064C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YML063W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YML058W-A
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Tomar RS et al., EMBO J, 2008 Jun 4;27(11):1575-84Tomar RS et al., EMBO J, 2008 Jun 4;27(11):1575-84 |
Indirect |
Northern blot - WT vs TF mutant |
Positive |
S288c |
Methylmethane sulfonate stress |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML058W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YML056C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YML055W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML054C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML053C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML052W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML050W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YML046W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YML043C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML042W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YML038C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML036W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YML028W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YML026C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YML025C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YML024W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YML022W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YML015C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML014W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML013W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML008C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YML007W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
ChIP-seq |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML006C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML005W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YML004C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR005W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR006C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR008C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR009W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR011W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR012W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR013C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR013W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR014W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR015C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR016C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR017W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR026C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR027W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR034C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YMR038C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR041C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR046W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR052W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR053C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR055C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR057C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR060C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YMR065W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YMR066W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YMR069W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YMR082C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR083W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR086W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YMR086C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR087W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR092C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR093W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR096W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR099C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR100W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR101C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR103C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR107W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR108W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR111C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YMR113W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR114C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR116C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR117C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR119W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR120C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR121C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR122C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YMR122W-A
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YMR124W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR125W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR127C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR128W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR130W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR135C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YMR135W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR136W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR137C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR142C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR143W
|
PubMed
Moehle CM et al., Mol Cell Biol, 1991 May;11(5):2723-35Moehle CM et al., Mol Cell Biol, 1991 May;11(5):2723-35 |
Indirect |
LacZ - WT vs TF mutant |
Positive |
S288c |
histidine starvation |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR144W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR145C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR146C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR149W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR152W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR153W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YMR158C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR159C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR160W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR169C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YMR173W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR173W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR174C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR175W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YMR177W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR180C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR181C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR182C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR189W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR191W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR193W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR193C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR194W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR198W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR199W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR202W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR203W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR204C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR205C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR206W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR208W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR215W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR223W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR224C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR225C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR229C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR230W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR231W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR237W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR242C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR243C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR244W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR250W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR251W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR251W-A
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR257C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR262W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR263W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR265C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR266W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR275C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YMR279C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR285C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR288W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR290W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR291W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR292W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR294W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YMR295C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR296C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR297W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR303C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR307W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR312W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR315W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR316W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR319C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR322C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR325W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YMR326C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL339C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL338W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL337W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL335W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL332W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL331C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YNL329C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL328C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL327W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL326C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YNL325C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YNL320W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL315C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL311C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL310C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL309W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL308C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL306W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL302C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL301C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8 |
Direct |
ChIP |
N/A |
S288c |
YPGal medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL300W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL294C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL293W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL289W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL288W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL284C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL283C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL282W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL281W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL278W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL277W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL271C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL270C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL269W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YNL268W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL266W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL259C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL258C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL255C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL254C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL253W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL249C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL244C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL241C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL240C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL237W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL234W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL227C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL220W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL217W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL216W
|
PubMed
Graham IR et al., Mol Microbiol, 1994 Jun;12(6):931-40Graham IR et al., Mol Microbiol, 1994 Jun;12(6):931-40 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Graham IR et al., Curr Genet, 1996 Jul 31;30(2):93-100Graham IR et al., Curr Genet, 1996 Jul 31;30(2):93-100 |
Direct |
LacZ - WT vs mutant promoter sequence |
Negative |
S288c |
SC medium; mid-log phase |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL211C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL209W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL208W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL206C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL201C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YNL191W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL190W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL189W
|
PubMed
Fantino E et al., Mol Gen Genet, 1992 Dec;236(1):65-75Fantino E et al., Mol Gen Genet, 1992 Dec;236(1):65-75 |
Direct |
EMSA |
N/A |
S288c |
N/A |
YNL181W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL180C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL179C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL178W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Joo YJ et al., Biochim Biophys Acta, 2009;():Joo YJ et al., Biochim Biophys Acta, 2009;(): |
Direct |
LacZ - WT vs mutant promoter sequence |
Negative |
S288c |
SC medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 |
Direct |
ChIP |
N/A |
S288c |
3-aminotriazole |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL175C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL168C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL166C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL165W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL164C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL163C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL162W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL162W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL160W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL158W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL157W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL154C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL153C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL152W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL151C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL150W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL149C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL148C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YNL146W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL144C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL143C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL142W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL134C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL128W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL118C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL112W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YNL110C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL103W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL102W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL101W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL096C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL095C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL090W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL087W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YNL086W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNL085W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL084C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL080C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL079C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL078W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL077W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL076W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL074C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL073W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL072W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL070W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL069C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9 |
Direct |
ChIP |
N/A |
S288c |
in vitro |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YNL068C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL067W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL067W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL066W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL065W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL062C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL051W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNL050C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL044W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL043C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL037C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL036W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL031C
|
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL030W
|
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
RT-PCR - WT vs mutant promoter sequence |
Negative |
S288c |
G2/M phase arrested cells |
YNL029C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL028W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL027W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL025C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YNL024C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL011C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL010W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL008C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YNL005C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL004W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL003C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNR001C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR003C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR006W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR009W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNR011C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR013C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR014W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR016C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNR017W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR018W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR019W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR020C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR025C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR026C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR032W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YNR034W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNR041C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR042W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNR043W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNR044W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR047W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR050C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNR053C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR054C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR056C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR057C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR058W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNR060W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNR062C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YNR066C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR068C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YNR069C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR070W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR071C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR072W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR075W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNR076W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR077C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL166C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL164W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL161C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL158C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL157C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL155C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL152W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL151W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL150C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL148C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL147C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL143C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL141W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL139C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL138C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL137W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL136C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL135C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL133W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL130W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOL128C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL127W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL126C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL125W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL121C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL120C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL119C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL118C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL111C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL110W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL109W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL106W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL104C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL100W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOL099C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOL096C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOL091W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL086C
|
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Ahn SH et al., EMBO J, 2009 Feb 4;28(3):205-12Ahn SH et al., EMBO J, 2009 Feb 4;28(3):205-12 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL085C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL084W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL083W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL082W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL080C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOL076W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL075C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL072W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL071W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL070C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL068C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL067C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL065C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL064C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL060C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL059W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL058W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOL053W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOL052C-A
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL052C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL051W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOL049W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL046C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL043C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL041C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL040C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Bernstein BE et al., Genome Biol, 2004;5(9):R62Bernstein BE et al., Genome Biol, 2004;5(9):R62 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL039W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL038W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL037C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL030W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL029C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL024W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL020W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL016C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL014W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL012C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
Chip-on-chip |
N/A |
S288c |
Senescence |
YOL011W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL007C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOL002C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR003W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YOR006C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR008C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR008C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR008W-B
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR009W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR023C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR025W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YOR032C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR035C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR036W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR041C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR042W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR043W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR045W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR050C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR053W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR056C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR057W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR058C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR059C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR062C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR063W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YOR064C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR065W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR068C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR073W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOR075W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR076C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR078W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR080W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOR090C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR091W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR092W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR094W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR095C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR096W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR097C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOR100C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR101W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR106W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR107W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR112W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR113W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR121C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOR124C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR125C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR136W
|
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Indirect |
RT-PCR - WT vs TF mutant |
Positive |
S288c |
Senescence |
YOR138C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YOR140W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YOR152C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR153W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR161C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR162C
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR167C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YOR177C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR178C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR179C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR180C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR181W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR182C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOR183W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR184W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR186W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR190W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR191W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR192C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR193W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR194C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR195W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR202W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOR203W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOR204W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOR205C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR208W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR214C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR215C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR220W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR225W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR226C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR227W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR230W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR233W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YOR234C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shi L et al., Proc Natl Acad Sci U S A, 2013 Apr 30;110(18):7318-23Shi L et al., Proc Natl Acad Sci U S A, 2013 Apr 30;110(18):7318-23 |
Direct |
ChIP |
N/A |
S288c |
Oxidative phase |
PubMed
Li T et al., Biochim Biophys Acta, 2016 Feb;1859(2):405-19Li T et al., Biochim Biophys Acta, 2016 Feb;1859(2):405-19 |
Direct |
ChIP |
N/A |
S288c |
0.6M KCl |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR235W
|
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YOR236W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR237W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR244W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR246C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOR247W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR248W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR252W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR253W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR254C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOR259C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR261C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR265W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR267C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR268C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR269W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR273C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOR275C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR276W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR277C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR282W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR287C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR289W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR290C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOR292C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR293W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR294W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YOR298C-A
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR301W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR302W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR303W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR304W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR305W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR306C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YOR312C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR313C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR314W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR314W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR315W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR316C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOR317W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR323C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR327C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR328W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR333C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR334W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR335C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR337W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR338W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR339C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR340C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR341W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR342C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR343C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR344C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
ChIP-seq |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR345C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR347C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR348C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YOR349W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR350C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR354C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR355W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR357C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR358W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR359W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR360C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR361C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YOR365C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR366W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR367W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR369C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR370C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR372C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR374W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Zhu C et al., Genome Res, 2009 Apr;19(4):556-66Zhu C et al., Genome Res, 2009 Apr;19(4):556-66 |
Direct |
ChIP |
N/A |
S288c |
30 min of diamide treatment |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR375C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR376W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR377W
|
PubMed
Fujiwara D et al., Yeast, 1999 Sep 15;15(12):1183-97Fujiwara D et al., Yeast, 1999 Sep 15;15(12):1183-97 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
YOR378W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR380W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR381W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR382W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR383C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR385W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR387C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR388C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR389W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR391C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YOR394W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL283C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YPL281C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL280W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL278C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL277C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPL274W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPL273W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL272C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL270W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YPL268W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL265W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL260W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL253C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPL252C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL250C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL249C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL249C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL240C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL237W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL233W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL231W
|
PubMed
Schüller HJ et al., Eur J Biochem, 1994 Oct 1;225(1):213-22Schüller HJ et al., Eur J Biochem, 1994 Oct 1;225(1):213-22 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL230W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL229W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL228W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL227C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL226W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL223C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YPL222W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL221W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL220W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL218W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL215W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPL213W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL209C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL207W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL205C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL204W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL202C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL200W
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL199C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL198W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL197C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL193W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL191C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL190C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL189W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL188W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL187W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL186C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL180W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL177C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL176C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL174C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL173W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPL171C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL170W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL163C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL162C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL161C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL146C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL145C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL144W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL143W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL142C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL139C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YPL138C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL136W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL135W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL134C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YPL132W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL131W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL130W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL127C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
Chip-on-chip |
N/A |
S288c |
Senescence |
YPL118W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL113C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YPL112C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL111W
|
PubMed
Kovari LZ et al., J Bacteriol, 1993 Feb;175(4):941-51Kovari LZ et al., J Bacteriol, 1993 Feb;175(4):941-51 |
Direct |
LacZ - WT vs mutant promoter sequence |
Positive |
S288c |
Minimal medium; mid-log phase |
PubMed
Dubois E et al., Mol Gen Genet, 1997 Feb 20;253(5):568-80Dubois E et al., Mol Gen Genet, 1997 Feb 20;253(5):568-80 |
Indirect |
Enzyme activity - WT vs mutant promoter sequence |
Positive |
S288c |
cells grown on ammonia (basal, repressing conditions) |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL109C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL107W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL105C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL098C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YPL095C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL094C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL092W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL090C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL089C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL088W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL087W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL082C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL081W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL080C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YPL079W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL078C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPL076W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL075W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL068C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YPL067C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YPL062W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL061W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL060W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YPL059W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL058C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPL057C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL056C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YPL055C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL054W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL051W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL049C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL048W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL044C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL043W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL042C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL038W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL037C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL036W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL033C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YPL032C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL029W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YPL028W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL026C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL025C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YPL024W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL020C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL019C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL017C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL016W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL014W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL011C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR002W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR002C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR007C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPR008W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR009W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR010C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR014C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR015C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR018W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR020W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR028W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR029C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR030W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR032W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPR034W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR035W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR036W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR037C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR038W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR039W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR040W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR042C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR043W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR044C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR045C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR052C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR056W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR057W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR058W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YPR059C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR061C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR064W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR065W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR069C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR074C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR075C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR076W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR079W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR080W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR081C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPR093C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YPR102C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Zhu C et al., Genome Res, 2009 Apr;19(4):556-66Zhu C et al., Genome Res, 2009 Apr;19(4):556-66 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR103W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR105C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR106W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR110C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR111W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR119W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YPR121W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPR131C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR132W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR138C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR144C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR145W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR148C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR149W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR151C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR152C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR161C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPR162C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR167C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YPR175W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPR191W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR192W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR195C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR201W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YPR202W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCK0015C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
Q0110
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
Q0115
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YAL062W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL061W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL060W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL055W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YAL054C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YAL053W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YAL051W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YAL049C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL046C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YAL044C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL042C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL040C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
ChIP-seq |
N/A |
S288c |
YPD |
PubMed
Shi L et al., Proc Natl Acad Sci U S A, 2013 Apr 30;110(18):7318-23Shi L et al., Proc Natl Acad Sci U S A, 2013 Apr 30;110(18):7318-23 |
Direct |
ChIP |
N/A |
S288c |
Oxidative phase |
YAL039C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YAL038W
|
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Ahn SH et al., EMBO J, 2009 Feb 4;28(3):205-12Ahn SH et al., EMBO J, 2009 Feb 4;28(3):205-12 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Pfeiffer V et al., PLoS Genet, 2012;8(6):e1002747Pfeiffer V et al., PLoS Genet, 2012;8(6):e1002747 |
Direct |
ChIP |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YAL034W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAL034C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YAL033W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YAL030W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YAL028W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YAL025C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAL023C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL018C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YAL012W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL011W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YAL008W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YAL005C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL003W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL002W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YAR015W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAR020C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAR029W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YAR035W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAR053W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAR070C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAR071W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAR073W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YAR075W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBL112C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBL111C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YBL109W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBL108C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL108W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL103C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBL098W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBL093C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL092W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL088C
|
PubMed
Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99Buchman AR et al., Mol Cell Biol, 1988 Dec;8(12):5086-99 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YBL087C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL086C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL083C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBL082C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL081W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL077W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBL075C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YBL074C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBL072C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
YBL071W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL071C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL065W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBL064C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL063W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL061C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL060W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL059W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YBL056W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YBL054W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL053W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL052C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL050W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL049W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL044W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YBL043W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBL042C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBL041W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBL032W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBL031W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YBL030C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YBL029C-A
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL029W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL028C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL027W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 |
Direct |
ChIP |
N/A |
S288c |
3-aminotriazole |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL022C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL021C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBL020W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL015W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBL014C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL013W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YBL011W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL009W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YBL003C
|
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL002W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR004C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR005W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR009C
|
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
RT-PCR - WT vs mutant promoter sequence |
Negative |
S288c |
G2/M phase arrested cells |
YBR010W
|
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR011C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR013C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR014C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR021W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR024W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YBR025C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR029C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YBR031W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR033W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR035C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR036C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR037C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR039W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR041W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR044C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YBR046C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR047W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR048W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Bernstein BE et al., Genome Biol, 2004;5(9):R62Bernstein BE et al., Genome Biol, 2004;5(9):R62 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8 |
Direct |
ChIP |
N/A |
S288c |
YPD medium 39ºC (heat shock) |
PubMed
Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9Hall DB et al., Mol Cell Biol, 2006 May;26(9):3672-9 |
Direct |
ChIP |
N/A |
S288c |
in vitro |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72Joo YJ et al., EMBO J, 2011 Mar 2;30(5):859-72 |
Direct |
ChIP |
N/A |
S288c |
3-aminotriazole |
PubMed
Shi L et al., Proc Natl Acad Sci U S A, 2013 Apr 30;110(18):7318-23Shi L et al., Proc Natl Acad Sci U S A, 2013 Apr 30;110(18):7318-23 |
Direct |
ChIP |
N/A |
S288c |
Oxidative phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR049C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YBR050C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YBR052C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR057C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR060C
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR061C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR063C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR065C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR066C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR068C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR069C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR071W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR072W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes Dev, 2013 Jun 15;27(12):1406-20 |
Direct |
ChIP |
N/A |
S288c |
Senescence |
YBR077C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR078W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR082C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR083W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR084W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR084C-A
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54Reja R et al., Genes Dev, 2015 Sep 15;29(18):1942-54 |
Direct |
ChIP-exo |
N/A |
S288c |
Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR085W
|
PubMed
SokolÃÂková B et al., Biochem J, 2000;():SokolÃÂková B et al., Biochem J, 2000;(): |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR086C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJL090C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL089W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL088W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL086C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL080C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL079C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL078C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL077C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL076W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL070C
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YJL069C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL068C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL066C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJL061W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL056C
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL052W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL051W
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Negative |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YJL050W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL049W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL047C
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL045W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL044C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL043W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YJL042W
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YJL041W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL039C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL038C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL037W
|
PubMed
Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202Yarragudi A et al., Nucleic Acids Res, 2007;35(1):193-202 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
W303a |
Exponentially growing cells (OD600= 0.8 - 1.2) grown in YPD for 1 hour at 37.C |
YJL034W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YJL033W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL029C
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR390W
|
PubMed
Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34Lieb JD et al., Nat Genet, 2001 Aug;28(4):327-34 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLL017W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
YPL276W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL275W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAR009C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAL067W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR182C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR196C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR219C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR230W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBR296C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCR024C-B
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YDR034C-D
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR034C-C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR098C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNCP0005C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YNCL0045W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR170W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR210C-C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR210W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR246W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDR316W-B
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YDR316W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR365W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR365W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR524C-B
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YEL076C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YEL076C-A
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YER053C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YER138C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER137C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER159C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER188C-A
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR161C-D
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL007C-A
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YFR032C-B
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNCO0025W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGL006W-A
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGR038C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGL188C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YGR038C-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YAR010C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR027W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR035W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YGR109W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR161C-C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR240C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL048C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL015W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHL009W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR007C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL171W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL080W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL046W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YIL002W-A
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YIR018C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJR027W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR028W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL133C-A
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL127C-B
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL114W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR026W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL183C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YKL096C-B
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YDL131W
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLL066W-B
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR035C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR154C-G
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR157C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR162W-A
|
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLR227W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR256W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR264C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR285C-A
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNCJ0016C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YLR406C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YLR410W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR466C-B
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML100W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YML040W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR030W-A
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YMR045C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER054C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR194C-B
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YMR230W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YMR242W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL277W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNL284C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL067W-B
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNL054W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL024C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOL103W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR075C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOL166W-A
|
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
YOL103W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL170W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR015W
|
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - WT vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR032W-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR161C-C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YOR192C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR343W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR316C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YOR343W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL257W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL257W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL189C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71 |
Direct |
ChIP |
N/A |
S288c |
N/A |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YPL060C-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR036W-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YBL005W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR012W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBL101W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBL071C-B
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YBR196C-B
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YJL077W-B
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YNCD0004W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YNCM0017W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCM0016W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCM0015W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCM0014W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCM0013W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCM0012W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCM0011W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCI0006W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YCL020W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR210C-D
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR261W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YFL002W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR161W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR161W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR161W-C
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YHR214C-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 |
Direct |
ChIP |
N/A |
S288c |
Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium |
YHR214C-C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR029W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR410W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR412C-A
|
PubMed
Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS Biol, 2010 Mar 9;8(3):e1000329 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
YML045W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR046C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR050C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR051C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR192C-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR158W-B
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNCG0034W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YNCK0019W
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YNCG0040C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
tS(GCU)L
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGR031C-A
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YNCE0007C
|
PubMed
Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705Kasahara K et al., Mol Cell Biol, 2007 Oct;27(19):6686-705 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD |
YJL077W-A
|
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |