S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Rox1p	YJR047C	PubMed Keng T, Mol Cell Biol, 1992 Jun;12(6):2616-23	Indirect	lacZ - wt vs TF mutant	Negative	S288c	cells grown aerobically to mid log phase in synthetic glucose medium
		PubMed Lowry CV et al., Mol Cell Biol, 1990 Nov;10(11):5921-6	Indirect	lacZ - wt vs TF mutant	Negative	S288c	YPD medium; mid-log phase
		PubMed Trueblood CE et al., Genetics, 1988 Nov;120(3):671-80	Indirect	lacZ - wt vs TF mutant	Negative	S288c	SD medium; mid-log phase
		PubMed Lowry CV et al., Mol Cell Biol, 1988 Nov;8(11):4651-8	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	aerobic growth to mid-log phase; synthetic medium
		PubMed Deckert J et al., Mol Cell Biol, 1995 Nov;15(11):6109-17	Indirect	Northern blot - wt vs TF mutant	N/A	S288c	N/A
		PubMed Kwast KE et al., Curr Genet, 1997 Dec;32(6):377-83	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	Semi Synthetic galactose (10g/L) medium with 0.1% Tween 80 (v/v), 20 mg of ergosterol, 350 ppm of silicone antifoam (per liter) - SSG-TEA
		PubMed Kastaniotis AJ et al., Mol Cell Biol, 2000 Oct;20(19):7088-98	Direct	EMSA	N/A	S288c	in vitro
		PubMed Abramova NE et al., Genetics, 2001 Mar;157(3):1169-77	Indirect	Northern blot - wt vs TF mutant	Negative	FY23	Exponential-phase cells grown in YPD medium under aerobic conditions
		PubMed Kwast KE et al., J Bacteriol, 2002 Jan;184(1):250-65	Indirect	Microarray analysis - wt vs TF mutant	Negative	JM43	Aerobiosis; cells grown in SSG-TEA medium (10 g/L galactose, 0.1% Tween 80, 20 mg/L ergosterol, 350 ppm silicone antifoam)
		PubMed Kwast KE et al., J Bacteriol, 2002 Jan;184(1):250-65	Indirect	Microarray analysis - wt vs TF mutant	Negative	JM43	Aerobiosis; cells grown in YPGalactose medium
		PubMed Waters BM et al., J Biol Chem, 2002 Sep 13;277(37):33749-57	Indirect	lacZ - wt vs TF mutant	Negative	BY4743	Aerobiosis; cells grown aerobically in metal-replete (50 microM iron, 50 microM zinc) CSD medium
			Indirect	lacZ - wt vs TF mutant	Negative	BY4743	Anaerobiosis; cells grown anaerobically in metal-replete (50 microM iron, 50 microM zinc) CSD medium
		PubMed Ter Linde JJ et al., Yeast, 2002 Jul;19(10):825-40	Indirect	Microarray analysis - wt vs TF mutant	Negative	CEN.PK113-7D	Steady-state chemostat cultures aerobically grown on mineral mediium containing 7.5 g/L glucose (growth-limiting nutrient)
		PubMed Sertil O et al., Nucleic Acids Res, 2003 Oct 15;31(20):5831-7	Indirect	Northern blot - wt vs TF mutant	Negative	FY23	YPD or SC media; Cells were grown under anaerobic and aerobic conditions; Anaerobic cultures were harvested in late log phase after 90 min of anaerobic growth
		PubMed Mennella TA et al., Eukaryot Cell, 2003 Dec;2(6):1288-303	Direct	ChIP	N/A	S288c	Hypoxia
		PubMed Klinkenberg LG et al., Eukaryot Cell, 2005 Apr;4(4):649-60	Indirect	lacZ - wt vs TF mutant	Negative	S288c	cells grown aerobically to mid log phase
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	YPD medium; mid-log phase
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C