S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Rox1p	YMR319C	PubMed Jensen LT et al., J Mol Biol, 2002 Apr 26;318(2):251-60	Indirect	lacZ - wt vs TF mutant	Negative	S288c	low iron minimal medium (SD-LF) supplemented with iron
		PubMed Waters BM et al., J Biol Chem, 2002 Sep 13;277(37):33749-57	Indirect	lacZ - wt vs TF mutant	Negative	BY4743	Aerobiosis; cells grown aerobically in metal-replete (50 microM iron, 50 microM zinc) CSD medium
			Indirect	lacZ - wt vs TF mutant	Negative	BY4743	Cells grown aerobically to mid-log phase in CSD medium supplemented with 0.1-100 microM iron (FeCl3)
			Indirect	lacZ - wt vs TF mutant	Negative	BY4743	Cells grown aerobically to mid-log phase in CSD medium supplemented with 0.1-100 microM zinc (ZnCl2)
		PubMed Ter Linde JJ et al., Yeast, 2002 Jul;19(10):825-40	Indirect	Microarray analysis - wt vs TF mutant	Negative	CEN.PK113-7D	Steady-state chemostat cultures aerobically grown on mineral mediium containing 7.5 g/L glucose (growth-limiting nutrient)
		PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF overexpression	Negative	N/A	Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	YPD medium; mid-log phase
		PubMed Caetano SM et al., J Biol Chem, 2015 Jul 24;290(30):18584-95	Direct	RT-PCR - wt vs mutant promoter sequence	Negative	S288c	SC medium 25 microM CdCl2