Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Rph1p
|
YAL067C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YAL065C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR090C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YBR091C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR092C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR093C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR094W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR096W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR101C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR105C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR113W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YBR115C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR120C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR122C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR126C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YBR128C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD |
PubMed
Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167 |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
JKM179 |
YPD + methyl-methane sulphonate (MMS) |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR129C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR132C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YBR139W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR141C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR142W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR145W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR146W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR147W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR149W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR150C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR152W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YBR155W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR156C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR157C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR158W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR159W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YBR162W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR166C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR175W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR176W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR179C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR180W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR181C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR182C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR183W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR185C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR186W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR189W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR191W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR198C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR201W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YBR204C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR207W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YBR208C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR214W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR222C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR238C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR240C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR241C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR244W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR245C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR247C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR248C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR251W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR256C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR264C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR265W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR267W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR269C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR270C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR285W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YBR287W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR288C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBR295W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR297W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YBR298C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YBR299W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; log phase cells harvested after 3h of growth |
YCL065W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YCL064C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL063W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YCL061C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL059C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL058C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YCL054W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL049C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCL043C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL040W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL039W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL038C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCL037C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL036W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL033C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCL030C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL027W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCL025C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YCL002C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YCR003W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR006C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YCR007C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR016W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR020C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR024C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCR025C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR026C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR031C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR043C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR046C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCR047C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR054C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR057C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR061W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCR065W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR068W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCR072C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR073C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR075C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR083W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCR086W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCR098C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR099C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR100C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR101C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR102C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCR105W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YCR106W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YCR107W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YDL248W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YDL247W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL246C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL244W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL243C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL241W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL240W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YDL238C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL234C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL232W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL230W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDL229W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL227C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL226C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL222C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDL218W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL215C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL211C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL210W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL209C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YDL206W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDL202W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL201W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL199C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDL198C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL194W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YDL193W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDL183C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL181W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL180W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL179W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL176W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDL174C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL173W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL171C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YDL169C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL167C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL164C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL161W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL159W-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDL156W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YDL154W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL153C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL150W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL149W
|
PubMed
Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD |
PubMed
Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167 |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
JKM179 |
YPD + methyl-methane sulphonate (MMS) |
YDL148C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL143W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL139C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL137W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL133W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL130W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL130W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL129W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL124W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL123W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL112W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL110C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL101C
|
PubMed
Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197 |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
BY4741 |
YPD + methyl-methane sulphonate (MMS) |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL095W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL086W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL085W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL083C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL082W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL081C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL075W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL072C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL070W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL069C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL067C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL066W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL063C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL060W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL049C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL048C
|
PubMed
Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197 |
Direct |
ChIP |
N/A |
BY4741 |
YPD |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
BY4741 |
YPD + methyl-methane sulphonate (MMS) |
YDL044C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL042C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL040C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDL039C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YDL037C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL036C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL035C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL031W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL027C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDL024C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL021W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDL018C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL014W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL010W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL009C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL004W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL003W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR001C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR004W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR009W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR012W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR016C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR019C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR021W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR022C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR025W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR027C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YDR031W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR032C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR033W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR034W-B
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR035W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR043C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR044W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR047W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR058C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR059C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR060W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR064W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR067C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YDR068W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YDR069C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR070C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR078C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR079W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR083W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR084C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YDR086C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR087C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR091C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR100W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR101C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR106W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YDR107C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR115W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR116C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR118W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR120C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR122W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR123C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; log phase cells harvested after 3h of growth |
YDR124W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YDR126W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR133C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YDR145W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR148C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR151C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR152W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR154C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR155C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR156W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR157W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR158W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR161W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR165W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR168W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR173C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR175C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR178W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR183W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR188W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR194C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR197W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR201W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR204W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR207C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR209C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR211W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR213W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR214W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR216W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YDR222W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR226W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR228C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR233C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR236C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR237W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR242W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR245W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YDR248C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR249C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR252W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR255C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR259C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR261C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR268W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR275W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR277C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR279W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR281C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR282C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YDR284C
|
PubMed
Oshiro J et al., J Biol Chem, 2003 Aug 22;278(34):31495-503Oshiro J et al., J Biol Chem, 2003 Aug 22;278(34):31495-503 |
Indirect |
lacZ - wt vs TF mutant |
Negative |
S288c |
cells grown in complete synthetic medium containing 2% glucose with 50 µM inositol and harvested in the stationary phase |
YDR285W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR286C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR292C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR298C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR299W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR312W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR313C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR315C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR316W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR317W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR320C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YDR320C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR322W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR322C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR324C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR330W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR336W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR337W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR340W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR342C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YDR343C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR345C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR347W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR354W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR358W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR361C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR363W-A
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR373W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR374C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YDR377W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR379C-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR380W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR382W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR384C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR385W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR389W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR398W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR403W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR405W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR412W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR418W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR427W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR446W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR447C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR448W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR449C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR450W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR451C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR461W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YDR462W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR465C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR470C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR471W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR472W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR473C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YDR480W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YDR484W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YDR486C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR490C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR493W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR494W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR496C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR497C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR503C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR506C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR507C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR508C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR511W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YDR514C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR523C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YDR525W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR528W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR529C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR533C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR539W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR540C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR541C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL066W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YEL065W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL064C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL060C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YEL059W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL055C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL054C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL050C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL048C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL040W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL030W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; log phase cells harvested after 3h of growth |
YEL029C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL024W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YEL013W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YEL012W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YEL009C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER001W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER002W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER006W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER013W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YER016W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER024W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER028C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER029C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER036C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YER037W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER039C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YER039C-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER042W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER043C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER044C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YER046W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER047C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YER052C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER053C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER055C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER056C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER057C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER058W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER062C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER065C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER069W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER070W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER073W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER074W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER081W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YER082C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER087W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER088C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YER090W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER093C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER095W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER096W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER101C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER102W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER110C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER111C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER115C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER119C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER124C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER126C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER127W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER128W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER131W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER137C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER142C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197 |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
BY4741 |
YPD + methyl-methane sulphonate (MMS) |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER150W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER153C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER154W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER156C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YER158C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YER163C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YER167W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER169W
|
PubMed
Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167 |
Indirect |
Western blot - wt vs TF mutant |
Positive |
JKM179 |
YPD + methyl-methane sulphonate (MMS) |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER170W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER175C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER177W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YER184C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER185W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YER188W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YFL062W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL061W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL059W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YFL056C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL055W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YFL051C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YFL046W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL040W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YFL034W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YFL031W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL030W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YFL028C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL023W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL022C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL021W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL018C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL017W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL015C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL014W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL010W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL008W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFL003C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YFR007W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR017C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR024C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YFR030W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR031C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR033C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR046C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR049W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR050C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR052W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YFR055W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YFR057W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL263W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; log phase cells harvested after 3h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL262W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL259W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL258W-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YGL255W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL250W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YGL245W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL242C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL238W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YGL236C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL234W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL229C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL227W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YGL225W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL224C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL223C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YGL222C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGL209W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL208W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL202W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL196W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL191W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL189C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL188C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL187C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL184C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL183C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL180W
|
PubMed
Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL179C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL175C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGL171W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL169W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL163C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL162W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL158W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL157W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL156W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL153W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL148W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YGL147C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL143C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL135W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL127C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL123W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL121C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL120C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL119W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL117W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL116W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL112C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL111W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL105W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL104C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL103W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL099W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL096W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL094C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL081W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YGL078C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL076C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL071W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL068W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL064C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL063W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL062W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL058W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL056C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL047W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL045W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL040C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL038C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL035C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGL033W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL032C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGL031C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL030W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL029W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL028C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL010W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL009C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGL003C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGR012W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR019W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR021W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR030C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR034W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR036C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YGR039W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGR040W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR043C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YGR044C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR046W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGR052W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YGR053C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR054W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR062C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR064W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR066C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR081C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR082W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR084C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR088W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YGR090W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR096W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR101W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR103W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR109C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR112W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR116W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR123C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR126W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR128C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR131W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR132C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR138C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR142W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR145W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR146C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YGR149W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR150C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YGR153W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR155W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR159C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR162W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR165W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR166W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR169C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR177C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YGR182C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR183C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR188C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR189C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR194C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR197C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR200C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR201C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR209C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR211W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGR213C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR214W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR221C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR222W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR225W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR226C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YGR227W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR231C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR232W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR234W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR236C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YGR238C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR239C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR243W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGR244C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR245C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR255C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YGR256W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR258C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YGR260W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR261C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR267C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR269W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR270W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YGR271C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR280C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR287C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR289C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YHL048W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; log phase cells harvested after 3h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL043W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YHL042W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL040C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL039W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL038C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL035C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHL033C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL030W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHL028W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL020C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YHL018W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YHL015W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL014C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL012W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL010C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHL008C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YHL004W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL002W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YHR001W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR004C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YHR006W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR008C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR011W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR016C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR018C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR024C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR037W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR038W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR039C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR048W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YHR049W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR049C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YHR050W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR051W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR052W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR057C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YHR059W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR061C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR065C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR066W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR069C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR070W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR071W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR075C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YHR079C-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR080C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YHR085W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR088W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR089C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR092C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR094C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR096C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR104W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR106W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR110W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR112C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR113W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR116W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR118C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR132W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR135C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR136C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR137W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR140W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR141C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR142W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR143W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR146W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR147C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR148W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR154W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR155W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YHR169W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR170W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR171W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD |
PubMed
Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
mid-log phase - YPD |
PubMed
Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167 |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
JKM179 |
YPD + methyl-methane sulphonate (MMS) |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YHR176W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR196W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR197W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR200W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR203C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR207C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YHR209W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR215W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR216W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHR219W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL169C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL165C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL164C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL156W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL148W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YIL146C
|
PubMed
Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD |
YIL142W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL140W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL134W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL133C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL127C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL124W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL123W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL117C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL116W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL108W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL107C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIL104C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL096C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL093C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL091C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL089W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YIL087C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL085C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIL073C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YIL072W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YIL070C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL069C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL067C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL064W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL063C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL056W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL055C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIL051C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL049W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL042C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YIL037C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL034C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL026C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YIL023C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL019W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL018W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL014C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIL011W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL010W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIL009W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL006W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR007W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIR008C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YIR009W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR010W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIR017C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR021W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR023W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YIR026C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR027C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR028W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIR032C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YIR033W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR034C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR036C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIR037W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIR038C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIR039C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR041W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIR042C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL217W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL213W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL212C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL200C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YJL199C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL190C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL187C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL185C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL184W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL183W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL181W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL180C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL177W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL173C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL172W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL171C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL170C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL166W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL165C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL164C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YJL163C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL161W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL160C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL158C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL155C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL153C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL148W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL144W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL143W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL137C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL132W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL131C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL126W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YJL125C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL116C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL115W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL109C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL108C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL107C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL105W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YJL102W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL096W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL026W
|
PubMed
Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197 |
Direct |
ChIP |
N/A |
BY4741 |
YPD |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
BY4741 |
YPD + methyl-methane sulphonate (MMS) |
YJL016W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL011C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL010C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR002W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR010W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR016C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR025C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJR034W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJR041C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR044C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR045C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YJR046W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YJR047C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR048W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR054W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR055W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR070C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR077C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR078W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR096W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJR100C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YJR101W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR102C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJR104C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJR109C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR112W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR113C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR115W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR117W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR120W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR121W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR122W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJR123W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR129C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR130C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR132W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR137C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR141W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YJR144W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR145C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR147W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR150C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR151C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR152W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR153W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YJR154W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR155W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJR156C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJR159W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL221W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL219W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL218C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL217W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL211C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL208W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL204W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL195W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL194C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL193C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL192C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL191W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL188C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YKL187C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YKL185W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YKL181W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL180W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL178C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL172W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL169C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL164C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL163W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL162C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL161C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL159C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL155C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL151C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL150W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL149C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL143W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL141W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL138C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL132C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL125W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL120W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL107W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL106W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL105C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YKL103C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL102C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL101W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL099C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL096W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL092C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL089W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL087C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL085W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL084W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKL082C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL078W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL073W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL072W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YKL071W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; log phase cells harvested after 3h of growth |
YKL068W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL067W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL066W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL065C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL062W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YKL058W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YKL050C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL043W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKL037W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL033W-A
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL033W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YKL021C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL016C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL013C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL009W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL006W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKL001C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR001C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YKR003W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKR006C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR007W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR011C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YKR013W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR020W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR026C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YKR034W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR041W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR042W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR051W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR056W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR060W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR061W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YKR062W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YKR065C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKR075C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR076W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKR077W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR081C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR085C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR092C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR093W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YKR098C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YKR102W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YKR106W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL063C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLL060C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YLL058W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YLL053C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YLL050C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL046C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL045C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL041C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL039C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLL034C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL033W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLL028W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL024C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL018C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLL015W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YLL011W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL009C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLL008W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR001C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR002C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR003C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR008C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR009W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR010C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR019W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR026C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YLR029C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR030W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; log phase cells harvested after 3h of growth |
YLR031W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YLR038C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR042C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR047C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YLR048W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR049C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR050C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR054C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YLR060W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR061W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR062C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR063W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR068W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR069C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR072W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR073C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR074C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR075W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR079W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR080W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR082C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YLR084C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR085C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR092W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YLR099C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR106C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR108C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR109W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR115W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR118C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR121C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR124W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR129W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR130C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR135W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR136C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR139C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR140W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR146C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR150W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR154C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YLR155C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR156W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR157C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR158C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR159W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR160C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR161W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR164W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR167W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR173W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR174W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR175W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR178C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR179C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR183C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR187W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR194C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR195C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR196W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR197W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR198C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR203C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR205C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR214W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR215C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR216C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR218C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR222C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR231C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR237W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR242C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR244C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR246W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR248W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR251W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR253W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR255C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR258W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR259C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR264W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR267W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YLR270W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR274W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YLR276C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR286C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR290C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR294C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR295C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR297W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR299W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR300W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR302C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YLR304C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR306W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR308W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YLR309C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR312C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR312W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR313C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR315W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR324W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR326W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR327C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR336C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR338W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YLR339C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YLR340W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR341W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YLR342W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR345W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR346C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR348C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR354C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR355C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR356W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR359W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YLR367W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR370C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR376C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR377C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR383W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR387C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR395C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR397C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR400W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR401C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR406C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR409C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR411W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR413W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR414C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR416C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YLR423C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YLR427W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR431C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR438W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YLR439W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR441C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR443W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR446W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR449W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YLR456W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YML130C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML129C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML125C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML121W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML110C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YML101C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YML100W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML093W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML091C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML090W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YML087C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YML086C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML085C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YML082W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML081C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML080W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML073C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML063W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML056C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML050W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML043C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML038C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML037C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YML035C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YML032C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML028W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YML027W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML026C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML022W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YML009C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YML001W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR002W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR011W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR014W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR016C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR019W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR023C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR024W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR030W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR032W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR033W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR034C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR040W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YMR049C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR058W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR062C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR068W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR069W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR070W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YMR071C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR074C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR076C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR081C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YMR083W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR084W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR085W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR093W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR094W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR095C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR096W
|
PubMed
Weiner A et al., PLoS Biol, 2012;10(7):e1001369Weiner A et al., PLoS Biol, 2012;10(7):e1001369 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Diamide exposure-45min |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR100W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR101C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR105C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR107W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YMR108W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR116C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR118C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR120C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YMR122W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR125W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR128W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR133W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR136W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR142C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR143W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR144W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR147W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR148W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR152W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR157C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR159C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YMR160W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YMR163C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR165C
|
PubMed
Pascual F et al., J Biol Chem, 2013 Dec 13;288(50):35781-92Pascual F et al., J Biol Chem, 2013 Dec 13;288(50):35781-92 |
Indirect |
lacZ - wt vs TF mutant |
Positive |
S288c |
YEPD medium or SC medium supp. with 2% glucose |
YMR170C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR171C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR173W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR173W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR174C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR175W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR179W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR181C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR182C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR184W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR186W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR188C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR189W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YMR192W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR193W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR193C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR195W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YMR199W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR200W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR204C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR206W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR215W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR217W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR220W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR222C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YMR227C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR228W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR229C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR236W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR238W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR239C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR244W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YMR246W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR250W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR251W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR256C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR259C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR267W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR268C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YMR269W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR271C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR274C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR277W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR290C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR294W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR295C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR297W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YMR299C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YMR304C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR305C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR307W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR309C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR310C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR315W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR316W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR317W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YMR321C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR322C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YMR323W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL333W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL332W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL327W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL326C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL317W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL315C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL312W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL311C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL308C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL306W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL305C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL302C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL301C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL300W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL294C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL293W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL292W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL290W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL289W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL287W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL281W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL279W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL278W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL274C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL269W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL257C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YNL256W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL252C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL248C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL241C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL234W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL222W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL214W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL209W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL208W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL202W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL200C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL196C
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YNL194C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YNL193W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YNL192W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL191W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL185C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL184C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL182C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL178W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL175C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL167C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL163C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL162W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL160W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL155W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL149C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL148C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL145W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNL143C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL141W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL137C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL134C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL132W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL129W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL125C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL124W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL122C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL120C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL119W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL118C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YNL117W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL115C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL112W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL110C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL104C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL099C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL093W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YNL092W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL078W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL077W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL076W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL075W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL069C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL067W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL065W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL064C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL062C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL061W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL058C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL052W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL050C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL044W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL037C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL036W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL034W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL031C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL030W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL029C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNL027W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNL024C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL022C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL015W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNL012W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL011C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YNL007C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNL002C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR006W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNR009W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR010W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR012W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR014W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR017W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR022C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNR024W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR029C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR030W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR034W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR035C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR037C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNR038W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YNR040W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNR044W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNR047W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR053C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR054C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR057C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR058W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR065C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR066C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR067C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR068C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR069C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNR070W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YNR071C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YNR073C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL165C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL163W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YOL160W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL159C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL158C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL157C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL156W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL155C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL154W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL152W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL151W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL150C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL147C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL146W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL144W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL140W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL135C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL131W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL129W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL128C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL124C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL121C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YOL120C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL119C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL118C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL117W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL115W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL113W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL109W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL105C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YOL104C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL101C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL097C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL093W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL091W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL090W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL086W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL086C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL084W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL083W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL082W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL080C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL078W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YOL077W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL077C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL076W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOL073C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOL071W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL064C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL060C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL059W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL058W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL056W
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YOL051W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL048C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL047C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOL041C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL040C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL039W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL038W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL036W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL031C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YOL021C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL017W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL016C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL014W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL010W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL007C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR001W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR004W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR006C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR008C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR015W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR017W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR020C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR026W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR027W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR028C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR038C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR040W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR043W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR044W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR056C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR062C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR063W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR064C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YOR065W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR066W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YOR078W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR091W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR095C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR096W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR100C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR103C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR104W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR105W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR114W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR119C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR121C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR122C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR126C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR130C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR134W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR136W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR137C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR142W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR151C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YOR152C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR153W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR155C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR158W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR168W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR173W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR177C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR182C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YOR185C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR195W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR197W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR198C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR202W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR206W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR208W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR209C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR212W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR215C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR217W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR218C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR220W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR228C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR230W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR243C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR247W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR248W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR254C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR256C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR260W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR264W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR271C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR272W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR273C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR285W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR287C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR289W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR291W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR292C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR293W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR297C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR298W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR298C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR302W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR303W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR306C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR309C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR310C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR313C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR314W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR315W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR316C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR317W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR324C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR326W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR327C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR330C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YOR333C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR334W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YOR337W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR338W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR340C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR341W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR348C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR349W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR354C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR361C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR365C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR367W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR369C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR374W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR377W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YOR378W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YOR382W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR383C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YOR385W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR386W
|
PubMed
Jang YK et al., Mol Cell Biol, 1999 Nov;19(11):7630-8Jang YK et al., Mol Cell Biol, 1999 Nov;19(11):7630-8 |
Indirect |
lacZ - wt vs TF mutant |
Negative |
S288c |
methylmethanesulphonate presence |
PubMed
Liang CY et al., Nucleic Acids Res, 2011 May;39(10):4151-65Liang CY et al., Nucleic Acids Res, 2011 May;39(10):4151-65 |
Direct |
ChIP |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197Li F et al., Nucleic Acids Res, 2017 May 19;45(9):5183-5197 |
Direct |
ChIP |
N/A |
BY4741 |
YPD |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
BY4741 |
YPD + methyl-methane sulphonate (MMS) |
YPL277C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YPL274W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL273W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL272C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL271W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL269W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YPL267W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL266W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL264C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL259C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL257W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPL256C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL255W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL253C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YPL251W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YPL250C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL249C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YPL247C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL246C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL245W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL241C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL240C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL223C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YPL221W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL220W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL217C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL215W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL211W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL206C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL203W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL200W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YPL193W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL192C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YPL188W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL186C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YPL183W-A
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPL183C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL182C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL179W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL176C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL174C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YPL173W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL172C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL171C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL170W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL169C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
Addition of 50mM menadione or ethanol |
YPL166W
|
PubMed
Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD |
PubMed
Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
mid-log phase - YPD |
PubMed
Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167 |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
JKM179 |
YPD + methyl-methane sulphonate (MMS) |
YPL165C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPL163C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL160W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL158C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL157W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL154C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPL153C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL148C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL146C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL144W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL134C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL132W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL131W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL126W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL124W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL123C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPL122C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL119C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPL113C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL104W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL093W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL091W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL090C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL088W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL087W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPL086C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL081W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL078C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL075W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL072W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL068C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL066W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL065W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL063W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL061W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL059W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL058C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL057C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YPL054W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPL043W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL041C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL040C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL039W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YPL033C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL032C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL029W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL019C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPL016W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPL015C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YPL014W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YPL013C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPL012W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR002W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR002C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR004C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR007C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR009W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR010C
|
PubMed
Cahyani I et al., Mol Cell Biol, 2015;():Cahyani I et al., Mol Cell Biol, 2015;(): |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
exponential |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR011C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR012W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR015C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR020W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR021C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR026W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YPR037C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR038W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR046W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR047W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR048W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR049C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR061C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR067W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR069C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR078C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR083W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR095C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YPR098C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR106W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR110C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR111W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR112C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR117W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR123C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR124W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR127W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR132W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR138C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YPR140W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR143W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR144C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR145W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR151C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YPR154W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR156C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR158W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR159W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR160W
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YPR167C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR172W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YPR174C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR175W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR176C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YPR184W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR186C
|
PubMed
Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64Schroeder EA et al., Cell Metab, 2013 Jun 4;17(6):954-64 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Addition of 50mM menadione or ethanol |
YPR191W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR192W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR193C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR194C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCA0001W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCG0010W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNCM0030W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL062W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL061W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL060W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YAL059W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL055W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL049C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YAL046C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL044C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL043C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL039C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL037W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YAL030W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YAL025C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL023C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAL021C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL008W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YAL007C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAR002W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YAR007C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAR008W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAR020C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAR035W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAR042W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YAR068W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD 30.C |
YAR071W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAR073W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YBL111C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL107C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBL103C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL102W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL100C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL099W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL098W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBL092W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL091C-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBL085W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL078C
|
PubMed
Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55Bernard A et al., Curr Biol, 2015 Mar 2;25(5):546-55 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD |
PubMed
Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
mid-log phase - YPD |
PubMed
Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167Eapen VV et al., Proc Natl Acad Sci U S A, 2017 Feb 14;114(7):E1158-E1167 |
Indirect |
Western blot - wt vs TF mutant |
Negative |
JKM179 |
YPD + methyl-methane sulphonate (MMS) |
Indirect |
RT-PCR - wt vs TF overexpression |
Negative |
JKM179 |
YPD + methyl-methane sulphonate (MMS) |
YBL075C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL072C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL069W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL065W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
YBL064C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBL063W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL059W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YBL054W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL051C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL045C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL043W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL040C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL039C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL030C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL028C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL027W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL024W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL023C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YBL016W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL013W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL005W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBL004W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL003C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL002W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBL001C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR003W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR004C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR005W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR006W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR012C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR013C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR018C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR023C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR024W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR031W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR032W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YBR033W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YBR035C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR036C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YBR038W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR039W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR040W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR046C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR047W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR048W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR050C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR052C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR053C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR054W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR056W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YBR057C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YBR067C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR069C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR071W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR072W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR073W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR079C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR083W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR084W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR084C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR088C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL089W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL088W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL085W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL079C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL078C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL074C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL070C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL069C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL068C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL067W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
YJL066C
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL062W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL060W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL052W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL050W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL045W
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YJL034W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL033W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR182C-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YBR230W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YCL012C
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YCR075W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCN0005C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER053C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YER138C
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
YNCO0025W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGL188C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNCJ0004C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR146C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YGR169C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YHL015W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YNCM0031W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YHR050W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL133C-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDL131W
|
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR264C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCC0012C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCN0013W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YLR342W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCJ0020W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YMR001C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YML100W-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YNL277W-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YNCA0003W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNL042W-B
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL155W-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YIL170W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOL038C-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YOR032W-A
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YNCD0030W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YOR381W-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YPL189C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCN0019C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YAL016C-B
|
PubMed
Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078Nordberg N et al., PLoS One, 2014 Jul 7;9(7):e95078 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
Grown in YPD media; PDS phase cells harvested after 12h of growth |
YBR196C-B
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR056W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YJL047C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNCJ0030W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCL0003W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCO0027C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNCC0006C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNCL0048W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCJ0007C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCP0015C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCK0020C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCC0003C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCL0046W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCN0018W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNCM0005C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCL0042C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCL0043C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCL0006W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YNCD0002C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNCE0002W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCP0014C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCC0004C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR210C-D
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
SC medium; mid-log phase |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
YGR161W-C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YGR174W-A
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YNCE0027C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YNCB0001W
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YNCJ0019C
|
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
YNCE0007C
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCE0024W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNCE0017W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YNL097C-B
|
PubMed
Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62Liang CY et al., Mol Biol Cell, 2013 Oct;24(20):3251-62 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD 30.C |
YDR119W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YNCL0018W
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YBR201C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase |
YCL048W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDL022C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YDR461C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Negative |
BY4741 |
YPD medium; exponential phase |
YIL156W-B
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YLR146W-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR010C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |
YPR145C-A
|
PubMed
Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic Acids Res, 2020 Sep 4;48(15):8360-8373 |
Indirect |
RNA-seq - wt vs TF overexpression |
Positive |
BY4741 |
YPD medium; exponential phase treated with 100 nM Rapamycin for 2 h |