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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor
Target
ORF/Genes
References Evidence
Code
Evidence
Experiment
Association
Type
Strain Environmental
Condition
Rpn4p YEL037C PubMed external link Jelinsky SA et al., Mol Cell Biol, 2000 Nov;20(21):8157-67Jelinsky SA et al., Mol Cell Biol, 2000 Nov;20(21):8157-67 Indirect Northern blot - wt vs TF mutant Positive S288c response to DNA damage (treatment with methyl methanesulfonate - MMS)
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Salin H et al., BMC Genomics, 2008 Jul 15;0(0):33Salin H et al., BMC Genomics, 2008 Jul 15;0(0):33 Indirect Microarray analysis - wt vs TF mutant Negative BY4742 YPD
Indirect Microarray analysis - wt vs TF mutant Negative BY4742 YPD+1mM selenite 40 min
Indirect Microarray analysis - wt vs TF mutant Negative BY4742 YPD+1mM selenite 60 min
Indirect Microarray analysis - wt vs TF mutant Negative BY4742 YPD+1mM selenite 80 min
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Karpov DS et al., FEMS Yeast Res, 2017 Jan 1;17(1):Karpov DS et al., FEMS Yeast Res, 2017 Jan 1;17(1): Indirect RT-PCR - wt vs TF mutant Positive BY4742 no info
PubMed external link Spasskaya DS et al., Int J Mol Sci, 2020 Oct 30;21(21):Spasskaya DS et al., Int J Mol Sci, 2020 Oct 30;21(21): Indirect RT-PCR - wt vs TF mutant Positive BY4742 methyl methanesulfonate (MMS) treatment at a final concentration of 0.2% for 30 min
Indirect RT-PCR - wt vs TF mutant Positive BY4742 no stress
Indirect RT-PCR - wt vs TF mutant Positive BY4742 4-NQO (2 microg/ml for 45 min)
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
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