S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Rtg3p	YNR001C	PubMed Liu Z et al., Mol Cell Biol, 1999 Oct;19(10):6720-8	Direct	EMSA	N/A	PSY142	rho+ cells cultivated in YNB 5% glucose + 0.01% glutamate
			Indirect	Northern blot - wt vs TF mutant	Positive	PSY142	rho0 cells cultivated in YP medium with 2% raffinose
			Indirect	lacZ - wt vs TF mutant	Positive	PSY142	rho0 cells cultivated in YP medium with 2% raffinose
			Indirect	lacZ - wt vs TF mutant	Positive	PSY142	rho0 cells cultivated in YP medium with 5% glucose
			Indirect	lacZ - wt vs TF mutant	Positive	PSY142	rho+ cells cultivated in YP medium with 2% raffinose
			Indirect	lacZ - wt vs TF mutant	Positive	PSY142	rho+ cells cultivated in YP medium with 5% glucose
		PubMed Epstein CB et al., Mol Biol Cell, 2001 Feb;12(2):297-308	Indirect	Microarray analysis - wt vs TF mutant	Positive	PSY142 (MATALFA leu2 lys2 ura3rho+)	Mitochondrial dysfunction; rho0 petites grown in YP raffinose (2%) medium to exponential phase
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Pastor MM et al., J Biol Chem, 2009 Oct 30;284(44):30307-17	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Osmotic stress; Exponential phase cells cultivated in YPD growth medium supplemented with 0.4 M NaCl
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000	Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
		PubMed Chow J et al., Genetics, 2019 Jul;212(3):667-690	Indirect	RNA-seq - wt vs TF mutant	Positive	PC538	YEP-Gal solid medium for 24 hr