S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Sip4p	YKR097W	PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	SC medium; mid-log phase
		PubMed Han BK et al., J Biol Chem, 2013 Jul 12;288(28):20633-45	Indirect	RT-PCR - wt vs TF mutant	N/A	S288c	Exponential phase cells in YPD / Wt & Mutant cells at 15.5h after shifting from YPD to YPEtOH
		PubMed Gasmi N et al., Genetics, 2014 Oct;198(2):547-60	Indirect	lacZ - wt vs TF mutant	Positive	S288c	0.2%Glucose+ 2% ethanol
		PubMed Mehlgarten C et al., PLoS One, 2015 Oct 6;10(10):e0139464	Indirect	RT-PCR - wt vs TF mutant	Negative	S288c	Grown in glucose and shifted to 3% ethanol for two hours
		PubMed Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000	Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h
			Direct	ChIP-exo	N/A	CEN.PK 113-5D	Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h