Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Sip4p
|
YLR377C
|
PubMed
Vincent O et al., EMBO J, 1998 Dec 1;17(23):7002-8Vincent O et al., EMBO J, 1998 Dec 1;17(23):7002-8 |
Indirect |
lacZ - wt vs TF overexpression |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Zaragoza O et al., Biochem J, 2001;():Zaragoza O et al., Biochem J, 2001;(): |
Direct |
EMSA |
N/A |
W303-1A |
In vitro; interaction of protein extracts of cells grown overnight in YP medium containing 2% ethanol with UAS2 (upsteam activating sequence 2) of FBP2 |
Indirect |
lacZ - wt vs TF mutant |
Negative |
W303-1A |
Cells expressing UAS2-lacZ (upstream activating sequence 2 of FBP1 fused to lacZ) grown in YP medium containing 2% ethanol |
PubMed
Han BK et al., J Biol Chem, 2013 Jul 12;288(28):20633-45Han BK et al., J Biol Chem, 2013 Jul 12;288(28):20633-45 |
Indirect |
RT-PCR - wt vs TF mutant |
N/A |
S288c |
Exponential phase cells in YPD / Wt & Mutant cells at 15.5h after shifting from YPD to YPEtOH |
PubMed
Gasmi N et al., Genetics, 2014 Oct;198(2):547-60Gasmi N et al., Genetics, 2014 Oct;198(2):547-60 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
0.2%Glucose+ 2% ethanol |
PubMed
Mehlgarten C et al., PLoS One, 2015 Oct 6;10(10):e0139464Mehlgarten C et al., PLoS One, 2015 Oct 6;10(10):e0139464 |
Indirect |
RT-PCR - wt vs TF mutant |
Negative |
S288c |
Grown in glucose and shifted to 3% ethanol for two hours |
PubMed
Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
PubMed
Dzanaeva L et al., Antonie Van Leeuwenhoek, 2021 Sep;114(9):1373-1385Dzanaeva L et al., Antonie Van Leeuwenhoek, 2021 Sep;114(9):1373-1385 |
Indirect |
RT-PCR - wt vs. TF mutant |
Positive |
CMB.GS010 |
YNB medium supplemented with 40 g/L xylose, 30.C, 100 rpm, for 36h. |