The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Skn7p
|
YML028W
|
PubMed
Lee J et al., J Biol Chem, 1999 Jun 4;274(23):16040-6Lee J et al., J Biol Chem, 1999 Jun 4;274(23):16040-6 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
He XJ et al., Mol Microbiol, 2005 Dec;58(5):1454-67He XJ et al., Mol Microbiol, 2005 Dec;58(5):1454-67 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Jackevicius CA et al., Pharmacoepidemiol Drug Saf, 2007 Feb;16(2):207-15Jackevicius CA et al., Pharmacoepidemiol Drug Saf, 2007 Feb;16(2):207-15 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 |
Indirect |
Microarray analysis - wt vs TF overexpression |
Positive |
N/A |
Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h |
PubMed
Lenssen E et al., Eukaryot Cell, 2007 Dec;6(12):2251-9Lenssen E et al., Eukaryot Cell, 2007 Dec;6(12):2251-9 |
Direct |
ChIP |
N/A |
S288c |
basal conditions (exponential growth in rich medium) |
PubMed
Kelley R et al., PLoS Genet, 2009 May;5(5):e1000488Kelley R et al., PLoS Genet, 2009 May;5(5):e1000488 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
BY4741 |
YPD 30.C from 0.1 mM H2O2 to 0.4 mM H2O2 |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Maity S et al., Cell Rep, 2016 Jul 19;16(3):851-65Maity S et al., Cell Rep, 2016 Jul 19;16(3):851-65 |
Indirect |
iTRAQ-MS - wt vs TF mutant |
Positive |
S288c |
5 mM DTT |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
|