S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Sok2p	YJR094C	PubMed VÃ¡chovÃ¡ L et al., J Biol Chem, 2004 Sep 3;279(36):37973-81	Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	Microarrays performed with sok2 deletion mutant colonies grown (13 days) in GM-agar (GM - 1% yeast extract, 3% glycerol, 2% agar, 30 mM CaCl2).
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	Microarrays performed with sok2 deletion mutant colonies grown (21 days) in GM-agar (GM - 1% yeast extract, 3% glycerol, 2% agar, 30 mM CaCl2).
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	Microarrays performed with sok2 deletion mutant colonies grown (4 days) in GM-agar (GM - 1% yeast extract, 3% glycerol, 2% agar, 30 mM CaCl2).
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	Microarrays performed with sok2 deletion mutant colonies grown (7 days) in GM-agar (GM - 1% yeast extract, 3% glycerol, 2% agar, 30 mM CaCl2).
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Borneman AR et al., Genes Dev, 2006 Feb 15;20(4):435-48	Direct	Chip-on-chip	N/A	S288c	Low nitrogen (SLAD) medium
		PubMed Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF overexpression	Negative	N/A	Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
		PubMed Borneman AR et al., Funct Integr Genomics, 2007 Oct;7(4):335-45	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Kahana S et al., Genetics, 2010 Nov;186(3):829-41	Direct	ChIP	N/A	S288c	SD medium
		PubMed Tam J et al., Nat Commun, 2020 May 8;11(1):2271	Direct	ChIP	N/A	SK1	Cells grown until pre-sporulation stage and were shifted to YP medium
			Direct	ChIP	N/A	SK1	Exponential cells; nutrient rich conditions
			Direct	ChIP	N/A	SK1	Shift from rich medium to pre-sporulation medium (SPO), 0 hours timepoint
			Indirect	smFISH - WT vs. TF double mutant	Negative	SK1	Exponential cells; nutrient rich conditions
			Indirect	smFISH - WT vs. TF mutant	Negative	SK1	Exponential cells; nutrient rich conditions
			Indirect	smFISH - WT vs. TF triple mutant	Negative	SK1	Exponential cells; nutrient rich conditions