S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Ste12p	YHR142W	PubMed Zeitlinger J et al., Cell, 2003 May 2;113(3):395-404	Direct	Chip-on-chip	N/A	S288c	YPD medium + 1% butanol (filamentous growth)
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Borneman AR et al., Genes Dev, 2006 Feb 15;20(4):435-48	Direct	Chip-on-chip	N/A	S288c	Low nitrogen (SLAD) medium
		PubMed Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF overexpression	Positive	N/A	Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
		PubMed Borneman AR et al., Funct Integr Genomics, 2007 Oct;7(4):335-45	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed LefranÃ§ois P et al., BMC Genomics, 2009;():	Direct	ChIP-seq	N/A	S288c	Pseudohyphal growth conditions (nitrogen depleted SLAD medium)
		PubMed Zheng W et al., Nature, 2010 Apr 22;464(7292):1187-91	Direct	ChIP-seq	N/A	S288c	YPD medium + alpha-factor
		PubMed Chavel CA et al., PLoS Genet, 2010 Mar 19;6(3):e1000883	Indirect	Microarray analysis - wt vs TF mutant	Positive	SIGMA1278b	wt and DELTAste12 cells cells containing an activated allele of MSB2 were grown in YEP-GAL for 6h, at which point cells were examined by microscopy for the characteristic filamentation response
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C