S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Ume6p	YJL106W	PubMed Bowdish KS et al., Mol Cell Biol, 1993 Apr;13(4):2172-81	Direct	lacZ - wt vs mutant promoter sequence	Negative	S288c	growth in YEPAc
		PubMed Steber CM et al., Proc Natl Acad Sci U S A, 1995 Dec 19;92(26):12490-4	Direct	DNA footprinting	N/A	S288c	N/A
		PubMed Goldmark JP et al., Cell, 2000 Oct 27;103(3):423-33	Indirect	Northern blot - wt vs TF mutant	Negative	W303	YEPD; 30.C; early-log phase
		PubMed Williams RM et al., Proc Natl Acad Sci U S A, 2002 Oct 15;99(21):13431-6	Indirect	Microarray analysis - wt vs TF mutant	Negative	W303	Cells grown in YPAcetate medium to late log phase
			Indirect	Microarray analysis - wt vs TF mutant	Negative	SK1	Cells grown in YPD medium to late log phase
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	YPD medium; mid-log phase
		PubMed Lardenois A et al., Mol Genet Genomics, 2015 Oct;290(5):2031-46	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	YPA growth
		PubMed Chen J et al., Elife, 2017 Sep 14;6(0):e27417	Direct	ChIP	N/A	SK1	Cells expressing Ume6-3V5 grown in BYTA medium (1% yeast extract, 2% bacto tryptone, 1% potassium acetate, 50 mM potassium phthalate)
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C
		PubMed Raithatha SA et al., Mol Cell Biol, 2021 Jun 23;41(7):e0037820	Direct	ChIP	N/A	DSY1700	YPD medium
			Direct	ChIP	N/A	DSY1700	Sporulation medium
			Direct	ChIP	N/A	DSY1700	YP Acetate medium
			Indirect	lacZ - wt vs TF mutant	Negative	DSY1700	SD medium