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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Condition
Yap1p YJL101C PubMed external link Stephen DW et al., Mol Microbiol, 1995 May;16(3):415-23Stephen DW et al., Mol Microbiol, 1995 May;16(3):415-23 Indirect Northern blot - wt vs TF mutant Positive S288c response to oxidative stress (1h treatment with H2O2); cells grown aerobically to early exponential phase
PubMed external link Wu AL et al., Mol Cell Biol, 1994 Sep;14(9):5832-9Wu AL et al., Mol Cell Biol, 1994 Sep;14(9):5832-9 Indirect lacZ - wt vs TF overexpression Positive S288c SD medium; mid-log phase
PubMed external link Lee J et al., J Biol Chem, 1999 Jun 4;274(23):16040-6Lee J et al., J Biol Chem, 1999 Jun 4;274(23):16040-6 Indirect Northern blot - wt vs TF mutant Positive S288c 20 minutes exposure to 0.2 mM H2O2 (SC growth medium)
PubMed external link Inoue Y et al., J Biol Chem, 1999 Sep 17;274(38):27002-9Inoue Y et al., J Biol Chem, 1999 Sep 17;274(38):27002-9 Indirect lacZ - wt vs TF mutant Positive S288c oxidative stress (cells treated with H2O2)
PubMed external link Sugiyama K et al., J Biol Chem, 2000 May 19;275(20):15535-40Sugiyama K et al., J Biol Chem, 2000 May 19;275(20):15535-40 Indirect Northern blot - wt vs TF mutant Positive S288c oxidative stress
PubMed external link Dumond H et al., Mol Microbiol, 2000 May;36(4):830-45Dumond H et al., Mol Microbiol, 2000 May;36(4):830-45 Indirect Microarray analysis - wt vs TF mutant Positive W303a Exponential cells grown in galactose minimal medium followed by oxidative stress (0.4mM H2O2)
PubMed external link Dormer UH et al., J Biol Chem, 2000 Oct 20;275(42):32611-6Dormer UH et al., J Biol Chem, 2000 Oct 20;275(42):32611-6 Direct lacZ - wt vs mutant promoter sequence Positive S288c 0,1mM Cadmium 2h
PubMed external link Westwater J et al., Yeast, 2002 Feb;19(3):233-9Westwater J et al., Yeast, 2002 Feb;19(3):233-9 Indirect lacZ - wt vs TF mutant Positive S288c were grown in SD medium with appropriate supplements, including methionine, to early exponential phase OD600 = 0.15 and exposed to CdCl2 (0.3 mM) for 1 h
PubMed external link Dormer UH et al., Biochim Biophys Acta, 2002;():Dormer UH et al., Biochim Biophys Acta, 2002;(): Direct lacZ - wt vs mutant promoter sequence Negative S288c Cultures of each transformant were grown in SD medium with casamino acids to early exponential phase (OD600=0.1-0.2) and exposed to H2O2 (0.4 mM) for 1 h
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Wheeler GL et al., J Biol Chem, 2003 Dec 12;278(50):49920-8Wheeler GL et al., J Biol Chem, 2003 Dec 12;278(50):49920-8 Indirect lacZ - wt vs TF mutant Positive S288c exposure to 1-chloro-2,4-dintrobenzene (CDNB)
PubMed external link Wysocki R et al., Mol Biol Cell, 2004 May;15(5):2049-60Wysocki R et al., Mol Biol Cell, 2004 May;15(5):2049-60 Indirect Northern blot - wt vs TF mutant Positive S288c Arsenite stress; Exponential-phase cells cultivated in YNB growth medium supplemented with 1 mM sodium arsenite
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Nevitt T et al., Yeast, 2004 Dec;21(16):1365-74Nevitt T et al., Yeast, 2004 Dec;21(16):1365-74 Indirect Northern blot - wt vs TF mutant Positive S288c oxidative stress (treatment with diamide); early log phase
PubMed external link Lucau-Danila A et al., Mol Cell Biol, 2005 Mar;25(5):1860-8Lucau-Danila A et al., Mol Cell Biol, 2005 Mar;25(5):1860-8 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium + 20 mg/L benomyl
PubMed external link Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A
PubMed external link Thorsen M et al., Physiol Genomics, 2007 Jun 19;30(1):35-43Thorsen M et al., Physiol Genomics, 2007 Jun 19;30(1):35-43 Indirect Microarray analysis - wt vs TF mutant Positive W303-1A 1.0 mM As(III), 1 h
PubMed external link Tan K et al., Proc Natl Acad Sci U S A, 2008 Feb 26;105(8):2934-9Tan K et al., Proc Natl Acad Sci U S A, 2008 Feb 26;105(8):2934-9 Direct Chip-on-chip N/A S288c SC medium + MMS (methylmethanesulfonate)
PubMed external link Menezes RA et al., Biochem J, 2008 Sep 1;414(2):301-11Menezes RA et al., Biochem J, 2008 Sep 1;414(2):301-11 Indirect RT-PCR - wt vs TF mutant Positive BY4741 2mM Na2HAsO or NaAsO2
PubMed external link Salin H et al., BMC Genomics, 2008 Jul 15;0(0):33Salin H et al., BMC Genomics, 2008 Jul 15;0(0):33 Direct Chip-on-chip N/A BY4742 YPD + Sodium selenite (1 mM), hydrogen peroxide (0.3 mM) or benomyl (20 microg/ml)
PubMed external link Kelley R et al., PLoS Genet, 2009 May;5(5):e1000488Kelley R et al., PLoS Genet, 2009 May;5(5):e1000488 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YPD 30.C 0.1 mM H2O2
Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YPD 30.C from 0.1 mM H2O2 to 0.4 mM H2O2
PubMed external link Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - wt vs TF mutant Positive S288c YPD medium; mid-log phase
PubMed external link Orumets K et al., Biotechnol J, 2012 Apr;7(4):566-8Orumets K et al., Biotechnol J, 2012 Apr;7(4):566-8 Indirect RT-PCR - wt vs TF mutant Positive S288c glucose-limited chemostat
PubMed external link Pimentel C et al., Biochim Biophys Acta, 2014 Jun;1840(6):1977-86Pimentel C et al., Biochim Biophys Acta, 2014 Jun;1840(6):1977-86 Indirect RT-PCR - wt vs TF mutant Positive S288c 2 mM CoSO4
PubMed external link Zhang C et al., Yeast, 2016 Jan;33(1):5-19Zhang C et al., Yeast, 2016 Jan;33(1):5-19 Indirect RNA-seq - wt vs TF mutant Positive S288c SD medium + MMS
PubMed external link da Silva SM et al., Biochim Biophys Acta Gen Subj, 2018 Oct;1862(10):2152-2161da Silva SM et al., Biochim Biophys Acta Gen Subj, 2018 Oct;1862(10):2152-2161 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 YPD + 2 mM arsenic
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
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